Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16045 and BWI76_RS16050 are separated by 2 nucleotides BWI76_RS16050 and BWI76_RS16055 overlap by 4 nucleotides BWI76_RS16055 and BWI76_RS16060 overlap by 11 nucleotides
BWI76_RS16045: BWI76_RS16045 - transporter, at 3,326,687 to 3,327,646
_RS16045
BWI76_RS16050: BWI76_RS16050 - malonate decarboxylase holo-ACP synthase, at 3,327,649 to 3,328,269
_RS16050
BWI76_RS16055: BWI76_RS16055 - malonate decarboxylase subunit epsilon, at 3,328,266 to 3,329,168
_RS16055
BWI76_RS16060: BWI76_RS16060 - LysR family transcriptional regulator, at 3,329,158 to 3,330,084
_RS16060
Position (kb)
3327
3328
3329 Strain fitness (log2 ratio)
-1
0
1
2 at 3326.841 kb on - strand, within BWI76_RS16045 at 3327.330 kb on + strand, within BWI76_RS16045 at 3327.471 kb on + strand, within BWI76_RS16045 at 3327.735 kb on + strand, within BWI76_RS16050 at 3327.812 kb on - strand, within BWI76_RS16050 at 3327.883 kb on - strand, within BWI76_RS16050 at 3328.433 kb on - strand, within BWI76_RS16055 at 3328.607 kb on + strand, within BWI76_RS16055 at 3328.703 kb on + strand, within BWI76_RS16055 at 3328.905 kb on + strand, within BWI76_RS16055 at 3328.913 kb on - strand, within BWI76_RS16055 at 3328.942 kb on - strand, within BWI76_RS16055
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 3,326,841 - BWI76_RS16045 0.16 +0.0 3,327,330 + BWI76_RS16045 0.67 +2.4 3,327,471 + BWI76_RS16045 0.82 +0.4 3,327,735 + BWI76_RS16050 0.14 +0.5 3,327,812 - BWI76_RS16050 0.26 +1.8 3,327,883 - BWI76_RS16050 0.38 +1.2 3,328,433 - BWI76_RS16055 0.18 +1.0 3,328,607 + BWI76_RS16055 0.38 +1.5 3,328,703 + BWI76_RS16055 0.48 +1.2 3,328,905 + BWI76_RS16055 0.71 +0.7 3,328,913 - BWI76_RS16055 0.72 +2.3 3,328,942 - BWI76_RS16055 0.75 +2.2
Or see this region's nucleotide sequence