Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13070 and BWI76_RS13075 are separated by 231 nucleotides BWI76_RS13075 and BWI76_RS13080 are separated by 176 nucleotides BWI76_RS13080 and BWI76_RS13085 are separated by 190 nucleotides
BWI76_RS13070: BWI76_RS13070 - hypothetical protein, at 2,726,041 to 2,726,268
_RS13070
BWI76_RS13075: BWI76_RS13075 - cupin, at 2,726,500 to 2,726,832
_RS13075
BWI76_RS13080: BWI76_RS13080 - tyramine oxidase, at 2,727,009 to 2,729,267
_RS13080
BWI76_RS13085: BWI76_RS13085 - bifunctional oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase, at 2,729,458 to 2,731,503
_RS13085
Position (kb)
2727
2728
2729
2730 Strain fitness (log2 ratio)
-1
0
1
2 at 2726.069 kb on - strand, within BWI76_RS13070 at 2726.205 kb on - strand, within BWI76_RS13070 at 2727.014 kb on + strand at 2727.138 kb on + strand at 2727.538 kb on + strand, within BWI76_RS13080 at 2727.699 kb on - strand, within BWI76_RS13080 at 2727.838 kb on + strand, within BWI76_RS13080 at 2727.925 kb on - strand, within BWI76_RS13080 at 2727.970 kb on + strand, within BWI76_RS13080 at 2728.157 kb on - strand, within BWI76_RS13080 at 2728.436 kb on + strand, within BWI76_RS13080 at 2728.484 kb on + strand, within BWI76_RS13080 at 2728.625 kb on + strand, within BWI76_RS13080 at 2728.857 kb on - strand, within BWI76_RS13080 at 2729.207 kb on - strand at 2729.232 kb on + strand at 2729.240 kb on - strand at 2729.331 kb on + strand at 2729.426 kb on - strand at 2729.426 kb on - strand at 2729.426 kb on - strand at 2729.818 kb on - strand, within BWI76_RS13085 at 2729.949 kb on + strand, within BWI76_RS13085 at 2729.957 kb on - strand, within BWI76_RS13085 at 2730.001 kb on + strand, within BWI76_RS13085 at 2730.009 kb on - strand, within BWI76_RS13085
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 2,726,069 - BWI76_RS13070 0.12 +0.1 2,726,205 - BWI76_RS13070 0.72 +0.4 2,727,014 + -0.1 2,727,138 + -0.2 2,727,538 + BWI76_RS13080 0.23 +0.2 2,727,699 - BWI76_RS13080 0.31 +0.1 2,727,838 + BWI76_RS13080 0.37 +1.0 2,727,925 - BWI76_RS13080 0.41 +0.3 2,727,970 + BWI76_RS13080 0.43 +1.8 2,728,157 - BWI76_RS13080 0.51 -1.7 2,728,436 + BWI76_RS13080 0.63 -0.8 2,728,484 + BWI76_RS13080 0.65 +0.2 2,728,625 + BWI76_RS13080 0.72 -0.3 2,728,857 - BWI76_RS13080 0.82 -0.1 2,729,207 - -0.2 2,729,232 + -0.4 2,729,240 - +0.1 2,729,331 + +0.4 2,729,426 - +0.0 2,729,426 - +0.2 2,729,426 - -0.1 2,729,818 - BWI76_RS13085 0.18 +0.7 2,729,949 + BWI76_RS13085 0.24 +0.3 2,729,957 - BWI76_RS13085 0.24 -0.5 2,730,001 + BWI76_RS13085 0.27 -0.2 2,730,009 - BWI76_RS13085 0.27 +0.4
Or see this region's nucleotide sequence