Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09675

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09670 and BWI76_RS09675 are separated by 90 nucleotidesBWI76_RS09675 and BWI76_RS09680 are separated by 200 nucleotides BWI76_RS09670: BWI76_RS09670 - recombination factor protein RarA, at 2,025,766 to 2,027,109 _RS09670 BWI76_RS09675: BWI76_RS09675 - serine--tRNA ligase, at 2,027,200 to 2,028,492 _RS09675 BWI76_RS09680: BWI76_RS09680 - dimethyl sulfoxide reductase subunit A, at 2,028,693 to 2,031,131 _RS09680 Position (kb) 2027 2028 2029Strain fitness (log2 ratio) -1 0 1at 2026.301 kb on - strand, within BWI76_RS09670at 2026.613 kb on - strand, within BWI76_RS09670at 2026.819 kb on + strand, within BWI76_RS09670at 2028.723 kb on - strandat 2028.793 kb on + strandat 2028.798 kb on + strandat 2028.844 kb on - strandat 2028.884 kb on + strandat 2028.975 kb on + strand, within BWI76_RS09680

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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2,026,301 - BWI76_RS09670 0.40 -0.5
2,026,613 - BWI76_RS09670 0.63 +0.6
2,026,819 + BWI76_RS09670 0.78 +0.1
2,028,723 - -0.1
2,028,793 + -0.0
2,028,798 + -0.3
2,028,844 - -1.3
2,028,884 + +0.9
2,028,975 + BWI76_RS09680 0.12 -0.6

Or see this region's nucleotide sequence