Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07375 and BWI76_RS07380 are separated by 37 nucleotides BWI76_RS07380 and BWI76_RS07385 are separated by 127 nucleotides BWI76_RS07385 and BWI76_RS07390 are separated by 180 nucleotides
BWI76_RS07375: BWI76_RS07375 - dehydrogenase, at 1,556,124 to 1,557,275
_RS07375
BWI76_RS07380: BWI76_RS07380 - hypothetical protein, at 1,557,313 to 1,557,729
_RS07380
BWI76_RS07385: BWI76_RS07385 - short-chain dehydrogenase/reductase SDR, at 1,557,857 to 1,558,606
_RS07385
BWI76_RS07390: BWI76_RS07390 - putative LysR-family transcriptional regulator, at 1,558,787 to 1,559,716
_RS07390
Position (kb)
1557
1558
1559 Strain fitness (log2 ratio)
-1
0
1
2 at 1557.105 kb on - strand, within BWI76_RS07375 at 1557.318 kb on - strand at 1557.318 kb on - strand at 1557.344 kb on + strand at 1557.362 kb on - strand, within BWI76_RS07380 at 1557.482 kb on - strand, within BWI76_RS07380 at 1557.767 kb on - strand at 1557.772 kb on + strand at 1557.811 kb on - strand at 1557.816 kb on + strand at 1557.824 kb on - strand at 1557.939 kb on + strand at 1558.175 kb on + strand, within BWI76_RS07385 at 1558.394 kb on - strand, within BWI76_RS07385 at 1558.839 kb on + strand at 1558.883 kb on - strand, within BWI76_RS07390 at 1558.883 kb on - strand, within BWI76_RS07390 at 1558.946 kb on - strand at 1559.178 kb on + strand, within BWI76_RS07390 at 1559.178 kb on + strand, within BWI76_RS07390 at 1559.233 kb on - strand, within BWI76_RS07390 at 1559.243 kb on - strand, within BWI76_RS07390 at 1559.298 kb on + strand, within BWI76_RS07390 at 1559.298 kb on + strand, within BWI76_RS07390 at 1559.313 kb on - strand, within BWI76_RS07390 at 1559.321 kb on - strand, within BWI76_RS07390 at 1559.415 kb on - strand, within BWI76_RS07390 at 1559.451 kb on + strand, within BWI76_RS07390 at 1559.456 kb on + strand, within BWI76_RS07390 at 1559.456 kb on + strand, within BWI76_RS07390 at 1559.459 kb on - strand, within BWI76_RS07390 at 1559.464 kb on - strand, within BWI76_RS07390 at 1559.488 kb on + strand, within BWI76_RS07390 at 1559.488 kb on + strand, within BWI76_RS07390 at 1559.490 kb on - strand, within BWI76_RS07390 at 1559.495 kb on - strand, within BWI76_RS07390 at 1559.500 kb on - strand, within BWI76_RS07390 at 1559.512 kb on - strand, within BWI76_RS07390 at 1559.512 kb on - strand, within BWI76_RS07390 at 1559.524 kb on + strand, within BWI76_RS07390 at 1559.547 kb on - strand, within BWI76_RS07390 at 1559.592 kb on - strand, within BWI76_RS07390 at 1559.603 kb on + strand, within BWI76_RS07390
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 1,557,105 - BWI76_RS07375 0.85 -0.2 1,557,318 - -0.4 1,557,318 - -0.9 1,557,344 + -0.2 1,557,362 - BWI76_RS07380 0.12 -0.5 1,557,482 - BWI76_RS07380 0.41 +0.2 1,557,767 - +0.5 1,557,772 + +0.6 1,557,811 - +0.2 1,557,816 + +0.1 1,557,824 - +0.9 1,557,939 + -0.2 1,558,175 + BWI76_RS07385 0.42 -0.7 1,558,394 - BWI76_RS07385 0.72 -0.2 1,558,839 + +0.0 1,558,883 - BWI76_RS07390 0.10 -0.6 1,558,883 - BWI76_RS07390 0.10 +0.9 1,558,946 - +0.4 1,559,178 + BWI76_RS07390 0.42 +0.4 1,559,178 + BWI76_RS07390 0.42 -0.3 1,559,233 - BWI76_RS07390 0.48 -0.4 1,559,243 - BWI76_RS07390 0.49 -0.0 1,559,298 + BWI76_RS07390 0.55 +0.3 1,559,298 + BWI76_RS07390 0.55 -0.3 1,559,313 - BWI76_RS07390 0.57 -1.2 1,559,321 - BWI76_RS07390 0.57 -0.4 1,559,415 - BWI76_RS07390 0.68 +0.5 1,559,451 + BWI76_RS07390 0.71 +1.4 1,559,456 + BWI76_RS07390 0.72 -0.9 1,559,456 + BWI76_RS07390 0.72 -0.3 1,559,459 - BWI76_RS07390 0.72 +1.4 1,559,464 - BWI76_RS07390 0.73 +0.2 1,559,488 + BWI76_RS07390 0.75 +0.5 1,559,488 + BWI76_RS07390 0.75 -0.1 1,559,490 - BWI76_RS07390 0.76 +1.8 1,559,495 - BWI76_RS07390 0.76 -1.4 1,559,500 - BWI76_RS07390 0.77 -0.2 1,559,512 - BWI76_RS07390 0.78 -0.5 1,559,512 - BWI76_RS07390 0.78 +0.2 1,559,524 + BWI76_RS07390 0.79 +0.3 1,559,547 - BWI76_RS07390 0.82 -0.2 1,559,592 - BWI76_RS07390 0.87 -0.4 1,559,603 + BWI76_RS07390 0.88 -0.9
Or see this region's nucleotide sequence