Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06590 and BWI76_RS06595 overlap by 1 nucleotides BWI76_RS06595 and BWI76_RS06600 are separated by 13 nucleotides BWI76_RS06600 and BWI76_RS06605 are separated by 33 nucleotides BWI76_RS06605 and BWI76_RS06610 are separated by 54 nucleotides BWI76_RS06610 and BWI76_RS06615 are separated by 108 nucleotides
BWI76_RS06590: BWI76_RS06590 - multidrug ABC transporter permease/ATP-binding protein, at 1,385,741 to 1,387,519
_RS06590
BWI76_RS06595: BWI76_RS06595 - hypothetical protein, at 1,387,519 to 1,387,749
_RS06595
BWI76_RS06600: BWI76_RS06600 - nitrogen regulatory protein P-II 2, at 1,387,763 to 1,388,101
_RS06600
BWI76_RS06605: BWI76_RS06605 - ammonium transporter, at 1,388,135 to 1,389,421
_RS06605
BWI76_RS06610: BWI76_RS06610 - hypothetical protein, at 1,389,476 to 1,390,216
_RS06610
BWI76_RS06615: BWI76_RS06615 - 3,4-dihydroxybenzoate decarboxylase, at 1,390,325 to 1,391,809
_RS06615
Position (kb)
1388
1389
1390 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1387.300 kb on - strand, within BWI76_RS06590 at 1387.726 kb on + strand, within BWI76_RS06595 at 1387.915 kb on - strand, within BWI76_RS06600 at 1387.945 kb on - strand, within BWI76_RS06600 at 1388.191 kb on + strand at 1388.199 kb on - strand at 1388.271 kb on - strand, within BWI76_RS06605 at 1388.290 kb on + strand, within BWI76_RS06605 at 1388.290 kb on + strand, within BWI76_RS06605 at 1388.298 kb on - strand, within BWI76_RS06605 at 1388.326 kb on + strand, within BWI76_RS06605 at 1388.362 kb on + strand, within BWI76_RS06605 at 1388.366 kb on + strand, within BWI76_RS06605 at 1388.731 kb on - strand, within BWI76_RS06605 at 1388.744 kb on - strand, within BWI76_RS06605 at 1388.821 kb on + strand, within BWI76_RS06605 at 1389.383 kb on + strand at 1389.391 kb on - strand at 1389.449 kb on + strand at 1389.521 kb on - strand at 1389.522 kb on + strand at 1389.537 kb on + strand at 1389.583 kb on - strand, within BWI76_RS06610 at 1389.661 kb on + strand, within BWI76_RS06610 at 1389.669 kb on - strand, within BWI76_RS06610 at 1389.674 kb on - strand, within BWI76_RS06610 at 1389.692 kb on - strand, within BWI76_RS06610 at 1389.728 kb on - strand, within BWI76_RS06610 at 1389.750 kb on - strand, within BWI76_RS06610 at 1389.783 kb on - strand, within BWI76_RS06610 at 1389.802 kb on + strand, within BWI76_RS06610 at 1389.806 kb on + strand, within BWI76_RS06610 at 1389.806 kb on + strand, within BWI76_RS06610 at 1389.810 kb on - strand, within BWI76_RS06610 at 1389.810 kb on - strand, within BWI76_RS06610 at 1389.831 kb on - strand, within BWI76_RS06610 at 1389.837 kb on + strand, within BWI76_RS06610 at 1389.845 kb on - strand, within BWI76_RS06610 at 1389.845 kb on - strand, within BWI76_RS06610 at 1389.869 kb on - strand, within BWI76_RS06610 at 1389.869 kb on - strand, within BWI76_RS06610 at 1389.869 kb on - strand, within BWI76_RS06610 at 1389.869 kb on - strand, within BWI76_RS06610 at 1389.869 kb on - strand, within BWI76_RS06610 at 1389.871 kb on + strand, within BWI76_RS06610 at 1389.871 kb on + strand, within BWI76_RS06610 at 1389.871 kb on + strand, within BWI76_RS06610 at 1389.879 kb on - strand, within BWI76_RS06610 at 1389.879 kb on - strand, within BWI76_RS06610 at 1389.879 kb on - strand, within BWI76_RS06610 at 1389.897 kb on + strand, within BWI76_RS06610 at 1389.897 kb on + strand, within BWI76_RS06610 at 1390.028 kb on + strand, within BWI76_RS06610 at 1390.028 kb on - strand, within BWI76_RS06610 at 1390.038 kb on - strand, within BWI76_RS06610 at 1390.038 kb on - strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.044 kb on + strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.052 kb on - strand, within BWI76_RS06610 at 1390.075 kb on + strand, within BWI76_RS06610 at 1390.083 kb on - strand, within BWI76_RS06610 at 1390.092 kb on + strand at 1390.095 kb on - strand, within BWI76_RS06610 at 1390.097 kb on - strand, within BWI76_RS06610 at 1390.099 kb on - strand, within BWI76_RS06610 at 1390.110 kb on + strand, within BWI76_RS06610 at 1390.110 kb on + strand at 1390.110 kb on + strand, within BWI76_RS06610 at 1390.110 kb on - strand, within BWI76_RS06610 at 1390.118 kb on - strand, within BWI76_RS06610 at 1390.118 kb on - strand, within BWI76_RS06610 at 1390.118 kb on - strand, within BWI76_RS06610 at 1390.118 kb on - strand, within BWI76_RS06610 at 1390.125 kb on + strand, within BWI76_RS06610 at 1390.183 kb on + strand at 1390.183 kb on + strand at 1390.183 kb on + strand at 1390.183 kb on + strand at 1390.183 kb on + strand at 1390.183 kb on + strand at 1390.191 kb on - strand at 1390.191 kb on - strand at 1390.276 kb on - strand at 1390.281 kb on + strand at 1390.289 kb on - strand at 1390.300 kb on + strand at 1390.306 kb on - strand at 1390.392 kb on + strand at 1390.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 1,387,300 - BWI76_RS06590 0.88 +1.2 1,387,726 + BWI76_RS06595 0.90 -1.2 1,387,915 - BWI76_RS06600 0.45 -1.5 1,387,945 - BWI76_RS06600 0.54 -1.5 1,388,191 + +0.5 1,388,199 - -2.3 1,388,271 - BWI76_RS06605 0.11 -2.4 1,388,290 + BWI76_RS06605 0.12 -1.3 1,388,290 + BWI76_RS06605 0.12 -2.1 1,388,298 - BWI76_RS06605 0.13 -0.2 1,388,326 + BWI76_RS06605 0.15 -1.8 1,388,362 + BWI76_RS06605 0.18 -2.3 1,388,366 + BWI76_RS06605 0.18 -2.2 1,388,731 - BWI76_RS06605 0.46 -2.4 1,388,744 - BWI76_RS06605 0.47 -0.5 1,388,821 + BWI76_RS06605 0.53 -2.8 1,389,383 + -0.8 1,389,391 - -1.7 1,389,449 + -1.3 1,389,521 - +0.0 1,389,522 + +0.1 1,389,537 + -0.6 1,389,583 - BWI76_RS06610 0.14 -1.8 1,389,661 + BWI76_RS06610 0.25 +0.7 1,389,669 - BWI76_RS06610 0.26 +0.4 1,389,674 - BWI76_RS06610 0.27 -0.6 1,389,692 - BWI76_RS06610 0.29 -1.8 1,389,728 - BWI76_RS06610 0.34 -0.1 1,389,750 - BWI76_RS06610 0.37 +0.1 1,389,783 - BWI76_RS06610 0.41 -0.1 1,389,802 + BWI76_RS06610 0.44 -0.3 1,389,806 + BWI76_RS06610 0.45 -1.3 1,389,806 + BWI76_RS06610 0.45 +0.2 1,389,810 - BWI76_RS06610 0.45 +0.1 1,389,810 - BWI76_RS06610 0.45 +0.3 1,389,831 - BWI76_RS06610 0.48 +0.0 1,389,837 + BWI76_RS06610 0.49 +0.3 1,389,845 - BWI76_RS06610 0.50 -0.1 1,389,845 - BWI76_RS06610 0.50 +0.4 1,389,869 - BWI76_RS06610 0.53 +0.2 1,389,869 - BWI76_RS06610 0.53 +0.2 1,389,869 - BWI76_RS06610 0.53 +0.1 1,389,869 - BWI76_RS06610 0.53 -1.2 1,389,869 - BWI76_RS06610 0.53 +0.3 1,389,871 + BWI76_RS06610 0.53 +0.2 1,389,871 + BWI76_RS06610 0.53 +0.2 1,389,871 + BWI76_RS06610 0.53 -1.1 1,389,879 - BWI76_RS06610 0.54 -0.1 1,389,879 - BWI76_RS06610 0.54 +2.5 1,389,879 - BWI76_RS06610 0.54 +0.1 1,389,897 + BWI76_RS06610 0.57 +0.6 1,389,897 + BWI76_RS06610 0.57 +0.5 1,390,028 + BWI76_RS06610 0.74 -1.0 1,390,028 - BWI76_RS06610 0.74 -0.9 1,390,038 - BWI76_RS06610 0.76 -0.1 1,390,038 - BWI76_RS06610 0.76 -1.0 1,390,044 + BWI76_RS06610 0.77 +0.1 1,390,044 + BWI76_RS06610 0.77 -0.4 1,390,044 + BWI76_RS06610 0.77 -1.3 1,390,044 + BWI76_RS06610 0.77 +1.0 1,390,044 + BWI76_RS06610 0.77 -0.3 1,390,044 + BWI76_RS06610 0.77 -1.2 1,390,044 + BWI76_RS06610 0.77 -0.1 1,390,044 + BWI76_RS06610 0.77 +0.2 1,390,044 + BWI76_RS06610 0.77 -1.2 1,390,044 + BWI76_RS06610 0.77 +0.5 1,390,044 + BWI76_RS06610 0.77 -0.2 1,390,044 + BWI76_RS06610 0.77 +0.1 1,390,044 + +0.9 1,390,044 + BWI76_RS06610 0.77 -0.6 1,390,044 + BWI76_RS06610 0.77 -2.7 1,390,044 + BWI76_RS06610 0.77 -0.3 1,390,044 + BWI76_RS06610 0.77 +0.6 1,390,044 + BWI76_RS06610 0.77 +0.1 1,390,044 + BWI76_RS06610 0.77 +0.2 1,390,044 + BWI76_RS06610 0.77 -0.1 1,390,044 + BWI76_RS06610 0.77 -0.3 1,390,044 + BWI76_RS06610 0.77 +0.6 1,390,044 + BWI76_RS06610 0.77 +0.7 1,390,044 + -0.5 1,390,044 + BWI76_RS06610 0.77 +0.5 1,390,044 + BWI76_RS06610 0.77 +0.6 1,390,044 + BWI76_RS06610 0.77 +0.6 1,390,044 + BWI76_RS06610 0.77 +0.4 1,390,052 - BWI76_RS06610 0.78 +0.4 1,390,052 - BWI76_RS06610 0.78 -0.2 1,390,052 - BWI76_RS06610 0.78 +0.2 1,390,052 - BWI76_RS06610 0.78 -0.5 1,390,052 - BWI76_RS06610 0.78 -0.5 1,390,052 - BWI76_RS06610 0.78 -0.5 1,390,052 - BWI76_RS06610 0.78 -0.5 1,390,052 - BWI76_RS06610 0.78 -1.5 1,390,052 - BWI76_RS06610 0.78 +0.0 1,390,052 - BWI76_RS06610 0.78 -0.2 1,390,052 - BWI76_RS06610 0.78 -0.1 1,390,052 - BWI76_RS06610 0.78 -0.3 1,390,052 - BWI76_RS06610 0.78 +0.7 1,390,052 - BWI76_RS06610 0.78 -0.6 1,390,052 - BWI76_RS06610 0.78 +0.4 1,390,052 - BWI76_RS06610 0.78 +1.5 1,390,052 - BWI76_RS06610 0.78 -1.3 1,390,052 - BWI76_RS06610 0.78 -1.1 1,390,052 - BWI76_RS06610 0.78 +0.1 1,390,052 - BWI76_RS06610 0.78 -0.2 1,390,052 - BWI76_RS06610 0.78 -1.6 1,390,052 - BWI76_RS06610 0.78 +0.5 1,390,052 - BWI76_RS06610 0.78 +0.1 1,390,052 - BWI76_RS06610 0.78 +0.1 1,390,052 - +2.5 1,390,052 - BWI76_RS06610 0.78 -0.6 1,390,052 - BWI76_RS06610 0.78 -0.2 1,390,052 - BWI76_RS06610 0.78 -1.7 1,390,052 - BWI76_RS06610 0.78 -0.5 1,390,052 - BWI76_RS06610 0.78 -0.6 1,390,052 - BWI76_RS06610 0.78 +0.2 1,390,052 - BWI76_RS06610 0.78 -0.1 1,390,052 - BWI76_RS06610 0.78 +0.4 1,390,075 + BWI76_RS06610 0.81 -0.3 1,390,083 - BWI76_RS06610 0.82 +0.8 1,390,092 + +0.5 1,390,095 - BWI76_RS06610 0.84 -0.4 1,390,097 - BWI76_RS06610 0.84 +0.3 1,390,099 - BWI76_RS06610 0.84 +0.9 1,390,110 + BWI76_RS06610 0.86 +0.3 1,390,110 + +1.5 1,390,110 + BWI76_RS06610 0.86 +2.2 1,390,110 - BWI76_RS06610 0.86 +1.0 1,390,118 - BWI76_RS06610 0.87 +0.3 1,390,118 - BWI76_RS06610 0.87 +0.6 1,390,118 - BWI76_RS06610 0.87 -0.6 1,390,118 - BWI76_RS06610 0.87 -0.4 1,390,125 + BWI76_RS06610 0.88 +0.1 1,390,183 + -0.5 1,390,183 + +1.7 1,390,183 + +0.3 1,390,183 + -0.5 1,390,183 + -0.2 1,390,183 + -0.1 1,390,191 - -0.3 1,390,191 - +0.2 1,390,276 - +0.2 1,390,281 + +0.5 1,390,289 - +0.7 1,390,300 + -0.4 1,390,306 - +0.6 1,390,392 + -1.1 1,390,413 - -0.1
Or see this region's nucleotide sequence