Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06605

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06590 and BWI76_RS06595 overlap by 1 nucleotidesBWI76_RS06595 and BWI76_RS06600 are separated by 13 nucleotidesBWI76_RS06600 and BWI76_RS06605 are separated by 33 nucleotidesBWI76_RS06605 and BWI76_RS06610 are separated by 54 nucleotidesBWI76_RS06610 and BWI76_RS06615 are separated by 108 nucleotides BWI76_RS06590: BWI76_RS06590 - multidrug ABC transporter permease/ATP-binding protein, at 1,385,741 to 1,387,519 _RS06590 BWI76_RS06595: BWI76_RS06595 - hypothetical protein, at 1,387,519 to 1,387,749 _RS06595 BWI76_RS06600: BWI76_RS06600 - nitrogen regulatory protein P-II 2, at 1,387,763 to 1,388,101 _RS06600 BWI76_RS06605: BWI76_RS06605 - ammonium transporter, at 1,388,135 to 1,389,421 _RS06605 BWI76_RS06610: BWI76_RS06610 - hypothetical protein, at 1,389,476 to 1,390,216 _RS06610 BWI76_RS06615: BWI76_RS06615 - 3,4-dihydroxybenzoate decarboxylase, at 1,390,325 to 1,391,809 _RS06615 Position (kb) 1388 1389 1390Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1387.300 kb on - strand, within BWI76_RS06590at 1387.726 kb on + strand, within BWI76_RS06595at 1387.915 kb on - strand, within BWI76_RS06600at 1387.945 kb on - strand, within BWI76_RS06600at 1388.191 kb on + strandat 1388.199 kb on - strandat 1388.271 kb on - strand, within BWI76_RS06605at 1388.290 kb on + strand, within BWI76_RS06605at 1388.290 kb on + strand, within BWI76_RS06605at 1388.298 kb on - strand, within BWI76_RS06605at 1388.326 kb on + strand, within BWI76_RS06605at 1388.362 kb on + strand, within BWI76_RS06605at 1388.366 kb on + strand, within BWI76_RS06605at 1388.731 kb on - strand, within BWI76_RS06605at 1388.744 kb on - strand, within BWI76_RS06605at 1388.821 kb on + strand, within BWI76_RS06605at 1389.383 kb on + strandat 1389.391 kb on - strandat 1389.449 kb on + strandat 1389.521 kb on - strandat 1389.522 kb on + strandat 1389.537 kb on + strandat 1389.583 kb on - strand, within BWI76_RS06610at 1389.661 kb on + strand, within BWI76_RS06610at 1389.669 kb on - strand, within BWI76_RS06610at 1389.674 kb on - strand, within BWI76_RS06610at 1389.692 kb on - strand, within BWI76_RS06610at 1389.728 kb on - strand, within BWI76_RS06610at 1389.750 kb on - strand, within BWI76_RS06610at 1389.783 kb on - strand, within BWI76_RS06610at 1389.802 kb on + strand, within BWI76_RS06610at 1389.806 kb on + strand, within BWI76_RS06610at 1389.806 kb on + strand, within BWI76_RS06610at 1389.810 kb on - strand, within BWI76_RS06610at 1389.810 kb on - strand, within BWI76_RS06610at 1389.831 kb on - strand, within BWI76_RS06610at 1389.837 kb on + strand, within BWI76_RS06610at 1389.845 kb on - strand, within BWI76_RS06610at 1389.845 kb on - strand, within BWI76_RS06610at 1389.869 kb on - strand, within BWI76_RS06610at 1389.869 kb on - strand, within BWI76_RS06610at 1389.869 kb on - strand, within BWI76_RS06610at 1389.869 kb on - strand, within BWI76_RS06610at 1389.869 kb on - strand, within BWI76_RS06610at 1389.871 kb on + strand, within BWI76_RS06610at 1389.871 kb on + strand, within BWI76_RS06610at 1389.871 kb on + strand, within BWI76_RS06610at 1389.879 kb on - strand, within BWI76_RS06610at 1389.879 kb on - strand, within BWI76_RS06610at 1389.879 kb on - strand, within BWI76_RS06610at 1389.897 kb on + strand, within BWI76_RS06610at 1389.897 kb on + strand, within BWI76_RS06610at 1390.028 kb on + strand, within BWI76_RS06610at 1390.028 kb on - strand, within BWI76_RS06610at 1390.038 kb on - strand, within BWI76_RS06610at 1390.038 kb on - strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strandat 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strandat 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.044 kb on + strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strandat 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.052 kb on - strand, within BWI76_RS06610at 1390.075 kb on + strand, within BWI76_RS06610at 1390.083 kb on - strand, within BWI76_RS06610at 1390.092 kb on + strandat 1390.095 kb on - strand, within BWI76_RS06610at 1390.097 kb on - strand, within BWI76_RS06610at 1390.099 kb on - strand, within BWI76_RS06610at 1390.110 kb on + strand, within BWI76_RS06610at 1390.110 kb on + strandat 1390.110 kb on + strand, within BWI76_RS06610at 1390.110 kb on - strand, within BWI76_RS06610at 1390.118 kb on - strand, within BWI76_RS06610at 1390.118 kb on - strand, within BWI76_RS06610at 1390.118 kb on - strand, within BWI76_RS06610at 1390.118 kb on - strand, within BWI76_RS06610at 1390.125 kb on + strand, within BWI76_RS06610at 1390.183 kb on + strandat 1390.183 kb on + strandat 1390.183 kb on + strandat 1390.183 kb on + strandat 1390.183 kb on + strandat 1390.183 kb on + strandat 1390.191 kb on - strandat 1390.191 kb on - strandat 1390.276 kb on - strandat 1390.281 kb on + strandat 1390.289 kb on - strandat 1390.300 kb on + strandat 1390.306 kb on - strandat 1390.392 kb on + strandat 1390.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,387,300 - BWI76_RS06590 0.88 +1.2
1,387,726 + BWI76_RS06595 0.90 -1.2
1,387,915 - BWI76_RS06600 0.45 -1.5
1,387,945 - BWI76_RS06600 0.54 -1.5
1,388,191 + +0.5
1,388,199 - -2.3
1,388,271 - BWI76_RS06605 0.11 -2.4
1,388,290 + BWI76_RS06605 0.12 -1.3
1,388,290 + BWI76_RS06605 0.12 -2.1
1,388,298 - BWI76_RS06605 0.13 -0.2
1,388,326 + BWI76_RS06605 0.15 -1.8
1,388,362 + BWI76_RS06605 0.18 -2.3
1,388,366 + BWI76_RS06605 0.18 -2.2
1,388,731 - BWI76_RS06605 0.46 -2.4
1,388,744 - BWI76_RS06605 0.47 -0.5
1,388,821 + BWI76_RS06605 0.53 -2.8
1,389,383 + -0.8
1,389,391 - -1.7
1,389,449 + -1.3
1,389,521 - +0.0
1,389,522 + +0.1
1,389,537 + -0.6
1,389,583 - BWI76_RS06610 0.14 -1.8
1,389,661 + BWI76_RS06610 0.25 +0.7
1,389,669 - BWI76_RS06610 0.26 +0.4
1,389,674 - BWI76_RS06610 0.27 -0.6
1,389,692 - BWI76_RS06610 0.29 -1.8
1,389,728 - BWI76_RS06610 0.34 -0.1
1,389,750 - BWI76_RS06610 0.37 +0.1
1,389,783 - BWI76_RS06610 0.41 -0.1
1,389,802 + BWI76_RS06610 0.44 -0.3
1,389,806 + BWI76_RS06610 0.45 -1.3
1,389,806 + BWI76_RS06610 0.45 +0.2
1,389,810 - BWI76_RS06610 0.45 +0.1
1,389,810 - BWI76_RS06610 0.45 +0.3
1,389,831 - BWI76_RS06610 0.48 +0.0
1,389,837 + BWI76_RS06610 0.49 +0.3
1,389,845 - BWI76_RS06610 0.50 -0.1
1,389,845 - BWI76_RS06610 0.50 +0.4
1,389,869 - BWI76_RS06610 0.53 +0.2
1,389,869 - BWI76_RS06610 0.53 +0.2
1,389,869 - BWI76_RS06610 0.53 +0.1
1,389,869 - BWI76_RS06610 0.53 -1.2
1,389,869 - BWI76_RS06610 0.53 +0.3
1,389,871 + BWI76_RS06610 0.53 +0.2
1,389,871 + BWI76_RS06610 0.53 +0.2
1,389,871 + BWI76_RS06610 0.53 -1.1
1,389,879 - BWI76_RS06610 0.54 -0.1
1,389,879 - BWI76_RS06610 0.54 +2.5
1,389,879 - BWI76_RS06610 0.54 +0.1
1,389,897 + BWI76_RS06610 0.57 +0.6
1,389,897 + BWI76_RS06610 0.57 +0.5
1,390,028 + BWI76_RS06610 0.74 -1.0
1,390,028 - BWI76_RS06610 0.74 -0.9
1,390,038 - BWI76_RS06610 0.76 -0.1
1,390,038 - BWI76_RS06610 0.76 -1.0
1,390,044 + BWI76_RS06610 0.77 +0.1
1,390,044 + BWI76_RS06610 0.77 -0.4
1,390,044 + BWI76_RS06610 0.77 -1.3
1,390,044 + BWI76_RS06610 0.77 +1.0
1,390,044 + BWI76_RS06610 0.77 -0.3
1,390,044 + BWI76_RS06610 0.77 -1.2
1,390,044 + BWI76_RS06610 0.77 -0.1
1,390,044 + BWI76_RS06610 0.77 +0.2
1,390,044 + BWI76_RS06610 0.77 -1.2
1,390,044 + BWI76_RS06610 0.77 +0.5
1,390,044 + BWI76_RS06610 0.77 -0.2
1,390,044 + BWI76_RS06610 0.77 +0.1
1,390,044 + +0.9
1,390,044 + BWI76_RS06610 0.77 -0.6
1,390,044 + BWI76_RS06610 0.77 -2.7
1,390,044 + BWI76_RS06610 0.77 -0.3
1,390,044 + BWI76_RS06610 0.77 +0.6
1,390,044 + BWI76_RS06610 0.77 +0.1
1,390,044 + BWI76_RS06610 0.77 +0.2
1,390,044 + BWI76_RS06610 0.77 -0.1
1,390,044 + BWI76_RS06610 0.77 -0.3
1,390,044 + BWI76_RS06610 0.77 +0.6
1,390,044 + BWI76_RS06610 0.77 +0.7
1,390,044 + -0.5
1,390,044 + BWI76_RS06610 0.77 +0.5
1,390,044 + BWI76_RS06610 0.77 +0.6
1,390,044 + BWI76_RS06610 0.77 +0.6
1,390,044 + BWI76_RS06610 0.77 +0.4
1,390,052 - BWI76_RS06610 0.78 +0.4
1,390,052 - BWI76_RS06610 0.78 -0.2
1,390,052 - BWI76_RS06610 0.78 +0.2
1,390,052 - BWI76_RS06610 0.78 -0.5
1,390,052 - BWI76_RS06610 0.78 -0.5
1,390,052 - BWI76_RS06610 0.78 -0.5
1,390,052 - BWI76_RS06610 0.78 -0.5
1,390,052 - BWI76_RS06610 0.78 -1.5
1,390,052 - BWI76_RS06610 0.78 +0.0
1,390,052 - BWI76_RS06610 0.78 -0.2
1,390,052 - BWI76_RS06610 0.78 -0.1
1,390,052 - BWI76_RS06610 0.78 -0.3
1,390,052 - BWI76_RS06610 0.78 +0.7
1,390,052 - BWI76_RS06610 0.78 -0.6
1,390,052 - BWI76_RS06610 0.78 +0.4
1,390,052 - BWI76_RS06610 0.78 +1.5
1,390,052 - BWI76_RS06610 0.78 -1.3
1,390,052 - BWI76_RS06610 0.78 -1.1
1,390,052 - BWI76_RS06610 0.78 +0.1
1,390,052 - BWI76_RS06610 0.78 -0.2
1,390,052 - BWI76_RS06610 0.78 -1.6
1,390,052 - BWI76_RS06610 0.78 +0.5
1,390,052 - BWI76_RS06610 0.78 +0.1
1,390,052 - BWI76_RS06610 0.78 +0.1
1,390,052 - +2.5
1,390,052 - BWI76_RS06610 0.78 -0.6
1,390,052 - BWI76_RS06610 0.78 -0.2
1,390,052 - BWI76_RS06610 0.78 -1.7
1,390,052 - BWI76_RS06610 0.78 -0.5
1,390,052 - BWI76_RS06610 0.78 -0.6
1,390,052 - BWI76_RS06610 0.78 +0.2
1,390,052 - BWI76_RS06610 0.78 -0.1
1,390,052 - BWI76_RS06610 0.78 +0.4
1,390,075 + BWI76_RS06610 0.81 -0.3
1,390,083 - BWI76_RS06610 0.82 +0.8
1,390,092 + +0.5
1,390,095 - BWI76_RS06610 0.84 -0.4
1,390,097 - BWI76_RS06610 0.84 +0.3
1,390,099 - BWI76_RS06610 0.84 +0.9
1,390,110 + BWI76_RS06610 0.86 +0.3
1,390,110 + +1.5
1,390,110 + BWI76_RS06610 0.86 +2.2
1,390,110 - BWI76_RS06610 0.86 +1.0
1,390,118 - BWI76_RS06610 0.87 +0.3
1,390,118 - BWI76_RS06610 0.87 +0.6
1,390,118 - BWI76_RS06610 0.87 -0.6
1,390,118 - BWI76_RS06610 0.87 -0.4
1,390,125 + BWI76_RS06610 0.88 +0.1
1,390,183 + -0.5
1,390,183 + +1.7
1,390,183 + +0.3
1,390,183 + -0.5
1,390,183 + -0.2
1,390,183 + -0.1
1,390,191 - -0.3
1,390,191 - +0.2
1,390,276 - +0.2
1,390,281 + +0.5
1,390,289 - +0.7
1,390,300 + -0.4
1,390,306 - +0.6
1,390,392 + -1.1
1,390,413 - -0.1

Or see this region's nucleotide sequence