Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06435 and BWI76_RS06440 are separated by 10 nucleotides BWI76_RS06440 and BWI76_RS06445 are separated by 65 nucleotides BWI76_RS06445 and BWI76_RS06450 are separated by 10 nucleotides BWI76_RS06450 and BWI76_RS06455 are separated by 13 nucleotides
BWI76_RS06435: BWI76_RS06435 - MFS transporter, at 1,352,150 to 1,353,514
_RS06435
BWI76_RS06440: BWI76_RS06440 - AP endonuclease, at 1,353,525 to 1,354,343
_RS06440
BWI76_RS06445: BWI76_RS06445 - FAD-dependent oxidoreductase, at 1,354,409 to 1,356,112
_RS06445
BWI76_RS06450: BWI76_RS06450 - NIPSNAP family protein, at 1,356,123 to 1,356,443
_RS06450
BWI76_RS06455: BWI76_RS06455 - 3-oxosteroid 1-dehydrogenase, at 1,356,457 to 1,358,133
_RS06455
Position (kb) 1354
1355
1356
1357 Strain fitness (log2 ratio) -1
0
1
2 at 1353.498 kb on - strand at 1354.045 kb on + strand, within BWI76_RS06440 at 1354.360 kb on + strand at 1354.614 kb on + strand, within BWI76_RS06445 at 1354.718 kb on + strand, within BWI76_RS06445 at 1354.869 kb on + strand, within BWI76_RS06445 at 1354.882 kb on + strand, within BWI76_RS06445 at 1354.882 kb on + strand, within BWI76_RS06445 at 1354.925 kb on + strand, within BWI76_RS06445 at 1355.069 kb on - strand, within BWI76_RS06445 at 1355.225 kb on - strand, within BWI76_RS06445 at 1355.316 kb on - strand, within BWI76_RS06445 at 1355.841 kb on - strand, within BWI76_RS06445 at 1356.277 kb on + strand, within BWI76_RS06450 at 1356.282 kb on + strand, within BWI76_RS06450 at 1356.418 kb on + strand at 1356.506 kb on - strand at 1356.552 kb on - strand at 1356.552 kb on - strand at 1356.591 kb on - strand at 1356.647 kb on - strand, within BWI76_RS06455 at 1356.678 kb on + strand, within BWI76_RS06455 at 1356.806 kb on + strand, within BWI76_RS06455
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 1,353,498 - +0.2 1,354,045 + BWI76_RS06440 0.63 -0.3 1,354,360 + +0.0 1,354,614 + BWI76_RS06445 0.12 +0.0 1,354,718 + BWI76_RS06445 0.18 -0.2 1,354,869 + BWI76_RS06445 0.27 -0.4 1,354,882 + BWI76_RS06445 0.28 +0.2 1,354,882 + BWI76_RS06445 0.28 +1.2 1,354,925 + BWI76_RS06445 0.30 +0.8 1,355,069 - BWI76_RS06445 0.39 +2.4 1,355,225 - BWI76_RS06445 0.48 +0.2 1,355,316 - BWI76_RS06445 0.53 +0.1 1,355,841 - BWI76_RS06445 0.84 +0.7 1,356,277 + BWI76_RS06450 0.48 +0.5 1,356,282 + BWI76_RS06450 0.50 +0.8 1,356,418 + +0.2 1,356,506 - +0.4 1,356,552 - +1.8 1,356,552 - +1.3 1,356,591 - +1.5 1,356,647 - BWI76_RS06455 0.11 +1.5 1,356,678 + BWI76_RS06455 0.13 +1.1 1,356,806 + BWI76_RS06455 0.21 -0.5
Or see this region's nucleotide sequence