Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05890

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05885 and BWI76_RS05890 are separated by 214 nucleotidesBWI76_RS05890 and BWI76_RS05895 are separated by 144 nucleotides BWI76_RS05885: BWI76_RS05885 - anion permease, at 1,237,087 to 1,237,896 _RS05885 BWI76_RS05890: BWI76_RS05890 - haloacid dehalogenase, at 1,238,111 to 1,238,773 _RS05890 BWI76_RS05895: BWI76_RS05895 - phosphonate ABC transporter, permease protein PhnE, at 1,238,918 to 1,239,799 _RS05895 Position (kb) 1238 1239Strain fitness (log2 ratio) -1 0 1 2at 1237.174 kb on - strand, within BWI76_RS05885at 1237.282 kb on - strand, within BWI76_RS05885at 1237.538 kb on + strand, within BWI76_RS05885at 1237.680 kb on + strand, within BWI76_RS05885at 1237.883 kb on - strandat 1238.123 kb on - strandat 1238.192 kb on - strand, within BWI76_RS05890at 1238.192 kb on - strand, within BWI76_RS05890at 1238.192 kb on - strand, within BWI76_RS05890at 1238.311 kb on + strand, within BWI76_RS05890at 1238.511 kb on + strand, within BWI76_RS05890at 1238.568 kb on + strand, within BWI76_RS05890at 1238.592 kb on + strand, within BWI76_RS05890at 1238.706 kb on + strand, within BWI76_RS05890at 1238.843 kb on - strandat 1238.903 kb on - strandat 1238.925 kb on + strandat 1239.027 kb on - strand, within BWI76_RS05895at 1239.207 kb on + strand, within BWI76_RS05895at 1239.711 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,237,174 - BWI76_RS05885 0.11 -0.1
1,237,282 - BWI76_RS05885 0.24 +1.9
1,237,538 + BWI76_RS05885 0.56 +0.1
1,237,680 + BWI76_RS05885 0.73 -0.2
1,237,883 - +0.2
1,238,123 - +0.8
1,238,192 - BWI76_RS05890 0.12 +0.1
1,238,192 - BWI76_RS05890 0.12 +0.8
1,238,192 - BWI76_RS05890 0.12 +0.6
1,238,311 + BWI76_RS05890 0.30 +0.1
1,238,511 + BWI76_RS05890 0.60 +0.0
1,238,568 + BWI76_RS05890 0.69 +0.1
1,238,592 + BWI76_RS05890 0.73 +0.3
1,238,706 + BWI76_RS05890 0.90 +0.1
1,238,843 - -0.4
1,238,903 - -0.1
1,238,925 + -0.7
1,239,027 - BWI76_RS05895 0.12 +0.4
1,239,207 + BWI76_RS05895 0.33 -0.1
1,239,711 - -0.6

Or see this region's nucleotide sequence