Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05680 and BWI76_RS05685 are separated by 251 nucleotides BWI76_RS05685 and BWI76_RS05690 are separated by 143 nucleotides
BWI76_RS05680: BWI76_RS05680 - LacI family transcriptional regulator, at 1,194,032 to 1,195,063
_RS05680
BWI76_RS05685: BWI76_RS05685 - dihydrodipicolinate synthase family protein, at 1,195,315 to 1,196,244
_RS05685
BWI76_RS05690: BWI76_RS05690 - fumarylacetoacetate (FAA) hydrolase, at 1,196,388 to 1,197,236
_RS05690
Position (kb)
1195
1196
1197 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1194.323 kb on - strand, within BWI76_RS05680 at 1194.407 kb on + strand, within BWI76_RS05680 at 1194.473 kb on + strand, within BWI76_RS05680 at 1194.530 kb on - strand, within BWI76_RS05680 at 1194.621 kb on - strand, within BWI76_RS05680 at 1195.023 kb on + strand at 1195.441 kb on + strand, within BWI76_RS05685 at 1195.681 kb on + strand, within BWI76_RS05685 at 1195.691 kb on + strand, within BWI76_RS05685 at 1195.740 kb on + strand, within BWI76_RS05685 at 1195.887 kb on - strand, within BWI76_RS05685 at 1195.920 kb on + strand, within BWI76_RS05685 at 1195.926 kb on - strand, within BWI76_RS05685 at 1195.939 kb on - strand, within BWI76_RS05685 at 1195.945 kb on - strand, within BWI76_RS05685 at 1196.021 kb on + strand, within BWI76_RS05685 at 1196.030 kb on - strand, within BWI76_RS05685 at 1196.133 kb on + strand, within BWI76_RS05685 at 1196.146 kb on - strand, within BWI76_RS05685 at 1196.219 kb on + strand at 1196.232 kb on - strand at 1196.239 kb on + strand at 1196.243 kb on + strand at 1196.293 kb on - strand at 1196.363 kb on + strand at 1196.364 kb on - strand at 1196.368 kb on + strand at 1196.371 kb on - strand at 1196.374 kb on + strand at 1196.394 kb on + strand at 1196.466 kb on - strand at 1196.509 kb on + strand, within BWI76_RS05690 at 1196.509 kb on + strand, within BWI76_RS05690 at 1196.510 kb on + strand, within BWI76_RS05690 at 1196.517 kb on - strand, within BWI76_RS05690 at 1196.517 kb on - strand, within BWI76_RS05690 at 1196.517 kb on - strand, within BWI76_RS05690 at 1196.517 kb on - strand, within BWI76_RS05690 at 1196.519 kb on + strand, within BWI76_RS05690 at 1196.527 kb on + strand, within BWI76_RS05690 at 1196.527 kb on - strand, within BWI76_RS05690 at 1196.527 kb on - strand, within BWI76_RS05690 at 1196.531 kb on + strand, within BWI76_RS05690 at 1196.662 kb on - strand, within BWI76_RS05690 at 1196.723 kb on + strand, within BWI76_RS05690 at 1196.760 kb on + strand, within BWI76_RS05690 at 1196.800 kb on - strand, within BWI76_RS05690 at 1196.808 kb on - strand, within BWI76_RS05690 at 1196.826 kb on + strand, within BWI76_RS05690 at 1197.016 kb on - strand, within BWI76_RS05690 at 1197.077 kb on + strand, within BWI76_RS05690 at 1197.205 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 1,194,323 - BWI76_RS05680 0.28 -1.3 1,194,407 + BWI76_RS05680 0.36 -1.4 1,194,473 + BWI76_RS05680 0.43 -2.2 1,194,530 - BWI76_RS05680 0.48 -1.2 1,194,621 - BWI76_RS05680 0.57 -2.7 1,195,023 + -3.0 1,195,441 + BWI76_RS05685 0.14 +1.1 1,195,681 + BWI76_RS05685 0.39 -0.5 1,195,691 + BWI76_RS05685 0.40 +1.6 1,195,740 + BWI76_RS05685 0.46 -0.2 1,195,887 - BWI76_RS05685 0.62 -0.0 1,195,920 + BWI76_RS05685 0.65 -0.0 1,195,926 - BWI76_RS05685 0.66 -1.5 1,195,939 - BWI76_RS05685 0.67 +0.8 1,195,945 - BWI76_RS05685 0.68 +0.9 1,196,021 + BWI76_RS05685 0.76 +0.3 1,196,030 - BWI76_RS05685 0.77 +0.2 1,196,133 + BWI76_RS05685 0.88 -0.1 1,196,146 - BWI76_RS05685 0.89 -0.2 1,196,219 + -0.8 1,196,232 - +1.5 1,196,239 + -3.0 1,196,243 + +0.2 1,196,293 - +0.8 1,196,363 + +0.4 1,196,364 - +0.2 1,196,368 + +0.0 1,196,371 - +0.3 1,196,374 + -0.4 1,196,394 + -0.2 1,196,466 - +0.1 1,196,509 + BWI76_RS05690 0.14 +0.6 1,196,509 + BWI76_RS05690 0.14 -0.3 1,196,510 + BWI76_RS05690 0.14 +1.3 1,196,517 - BWI76_RS05690 0.15 -0.3 1,196,517 - BWI76_RS05690 0.15 -0.6 1,196,517 - BWI76_RS05690 0.15 -0.1 1,196,517 - BWI76_RS05690 0.15 -0.3 1,196,519 + BWI76_RS05690 0.15 +0.1 1,196,527 + BWI76_RS05690 0.16 +0.6 1,196,527 - BWI76_RS05690 0.16 -0.1 1,196,527 - BWI76_RS05690 0.16 +0.3 1,196,531 + BWI76_RS05690 0.17 -0.3 1,196,662 - BWI76_RS05690 0.32 +0.3 1,196,723 + BWI76_RS05690 0.39 -0.7 1,196,760 + BWI76_RS05690 0.44 +0.4 1,196,800 - BWI76_RS05690 0.49 -0.1 1,196,808 - BWI76_RS05690 0.49 +1.0 1,196,826 + BWI76_RS05690 0.52 +0.2 1,197,016 - BWI76_RS05690 0.74 +0.5 1,197,077 + BWI76_RS05690 0.81 +0.8 1,197,205 - +1.1
Or see this region's nucleotide sequence