Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05295

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05290 and BWI76_RS05295 are separated by 12 nucleotidesBWI76_RS05295 and BWI76_RS05300 are separated by 335 nucleotides BWI76_RS05290: BWI76_RS05290 - DNA polymerase III subunit alpha, at 1,112,929 to 1,116,411 _RS05290 BWI76_RS05295: BWI76_RS05295 - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 1,116,424 to 1,117,383 _RS05295 BWI76_RS05300: BWI76_RS05300 - lysine decarboxylase LdcC, at 1,117,719 to 1,119,857 _RS05300 Position (kb) 1116 1117 1118Strain fitness (log2 ratio) -1 0 1at 1117.574 kb on - strandat 1117.607 kb on + strandat 1117.610 kb on - strandat 1117.613 kb on + strandat 1117.615 kb on - strandat 1117.615 kb on - strandat 1117.660 kb on + strandat 1117.662 kb on + strandat 1117.782 kb on + strandat 1117.904 kb on - strandat 1117.996 kb on + strand, within BWI76_RS05300at 1117.996 kb on + strand, within BWI76_RS05300at 1118.004 kb on - strand, within BWI76_RS05300at 1118.106 kb on - strand, within BWI76_RS05300at 1118.266 kb on - strand, within BWI76_RS05300at 1118.364 kb on - strand, within BWI76_RS05300

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,117,574 - +1.3
1,117,607 + -1.0
1,117,610 - +0.6
1,117,613 + -0.2
1,117,615 - -0.3
1,117,615 - -0.3
1,117,660 + +0.1
1,117,662 + +0.4
1,117,782 + -0.0
1,117,904 - +0.4
1,117,996 + BWI76_RS05300 0.13 -1.2
1,117,996 + BWI76_RS05300 0.13 -0.4
1,118,004 - BWI76_RS05300 0.13 -0.2
1,118,106 - BWI76_RS05300 0.18 -1.7
1,118,266 - BWI76_RS05300 0.26 -0.1
1,118,364 - BWI76_RS05300 0.30 -0.2

Or see this region's nucleotide sequence