Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04460

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04455 and BWI76_RS04460 are separated by 247 nucleotidesBWI76_RS04460 and BWI76_RS04465 are separated by 457 nucleotides BWI76_RS04455: BWI76_RS04455 - triphosphoribosyl-dephospho-CoA synthase CitG, at 920,111 to 921,019 _RS04455 BWI76_RS04460: BWI76_RS04460 - 4-hydroxy-tetrahydrodipicolinate reductase, at 921,267 to 922,088 _RS04460 BWI76_RS04465: BWI76_RS04465 - carbamoyl-phosphate synthase small subunit, at 922,546 to 923,694 _RS04465 Position (kb) 921 922 923Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 920.281 kb on - strand, within BWI76_RS04455at 920.283 kb on + strand, within BWI76_RS04455at 920.350 kb on + strand, within BWI76_RS04455at 920.372 kb on - strand, within BWI76_RS04455at 920.479 kb on - strand, within BWI76_RS04455at 920.497 kb on - strand, within BWI76_RS04455at 920.689 kb on + strand, within BWI76_RS04455at 920.728 kb on + strand, within BWI76_RS04455at 920.873 kb on + strand, within BWI76_RS04455at 920.952 kb on + strandat 921.142 kb on - strandat 922.434 kb on + strandat 922.440 kb on - strandat 922.440 kb on - strandat 922.599 kb on + strandat 922.828 kb on + strand, within BWI76_RS04465at 922.836 kb on + strand, within BWI76_RS04465at 922.836 kb on - strand, within BWI76_RS04465at 922.897 kb on - strand, within BWI76_RS04465at 923.052 kb on - strand, within BWI76_RS04465

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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920,281 - BWI76_RS04455 0.19 -0.5
920,283 + BWI76_RS04455 0.19 +0.2
920,350 + BWI76_RS04455 0.26 -0.9
920,372 - BWI76_RS04455 0.29 +0.9
920,479 - BWI76_RS04455 0.40 +0.2
920,497 - BWI76_RS04455 0.42 +0.2
920,689 + BWI76_RS04455 0.64 -3.1
920,728 + BWI76_RS04455 0.68 +0.2
920,873 + BWI76_RS04455 0.84 -0.1
920,952 + -1.1
921,142 - +0.4
922,434 + -0.3
922,440 - -1.2
922,440 - -0.5
922,599 + -4.0
922,828 + BWI76_RS04465 0.25 -3.7
922,836 + BWI76_RS04465 0.25 -4.4
922,836 - BWI76_RS04465 0.25 -3.8
922,897 - BWI76_RS04465 0.31 -0.1
923,052 - BWI76_RS04465 0.44 -3.6

Or see this region's nucleotide sequence