Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03535

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03530 and BWI76_RS03535 are separated by 138 nucleotidesBWI76_RS03535 and BWI76_RS03540 are separated by 123 nucleotidesBWI76_RS03540 and BWI76_RS03545 are separated by 241 nucleotidesBWI76_RS03545 and BWI76_RS03550 are separated by 17 nucleotides BWI76_RS03530: BWI76_RS03530 - tryptophan permease, at 732,670 to 733,926 _RS03530 BWI76_RS03535: BWI76_RS03535 - Tryptophanase (EC 4.1.99.1) (from data), at 734,065 to 735,453 _RS03535 BWI76_RS03540: BWI76_RS03540 - tryptophanase leader peptide, at 735,577 to 735,672 _RS03540 BWI76_RS03545: BWI76_RS03545 - QacE family quaternary ammonium compound efflux SMR transporter, at 735,914 to 736,243 _RS03545 BWI76_RS03550: BWI76_RS03550 - QacE family quaternary ammonium compound efflux SMR transporter, at 736,261 to 736,680 _RS03550 Position (kb) 734 735 736Strain fitness (log2 ratio) -2 -1 0 1 2 3at 733.067 kb on - strand, within BWI76_RS03530at 733.087 kb on - strand, within BWI76_RS03530at 733.099 kb on + strand, within BWI76_RS03530at 733.208 kb on + strand, within BWI76_RS03530at 733.339 kb on + strand, within BWI76_RS03530at 733.339 kb on + strand, within BWI76_RS03530at 733.359 kb on + strand, within BWI76_RS03530at 733.404 kb on - strand, within BWI76_RS03530at 733.444 kb on + strand, within BWI76_RS03530at 733.491 kb on + strand, within BWI76_RS03530at 733.491 kb on + strand, within BWI76_RS03530at 733.499 kb on - strand, within BWI76_RS03530at 733.516 kb on + strand, within BWI76_RS03530at 733.524 kb on - strand, within BWI76_RS03530at 733.534 kb on + strand, within BWI76_RS03530at 733.538 kb on + strand, within BWI76_RS03530at 733.542 kb on - strand, within BWI76_RS03530at 733.575 kb on + strand, within BWI76_RS03530at 733.583 kb on - strand, within BWI76_RS03530at 733.614 kb on - strand, within BWI76_RS03530at 733.615 kb on + strand, within BWI76_RS03530at 733.619 kb on - strand, within BWI76_RS03530at 733.675 kb on - strand, within BWI76_RS03530at 733.686 kb on + strand, within BWI76_RS03530at 733.694 kb on - strand, within BWI76_RS03530at 733.694 kb on - strand, within BWI76_RS03530at 733.731 kb on + strand, within BWI76_RS03530at 733.732 kb on + strand, within BWI76_RS03530at 733.732 kb on + strand, within BWI76_RS03530at 733.739 kb on - strand, within BWI76_RS03530at 733.742 kb on + strand, within BWI76_RS03530at 733.751 kb on + strand, within BWI76_RS03530at 733.752 kb on - strand, within BWI76_RS03530at 733.763 kb on + strand, within BWI76_RS03530at 733.769 kb on - strand, within BWI76_RS03530at 733.772 kb on + strand, within BWI76_RS03530at 733.774 kb on + strand, within BWI76_RS03530at 733.884 kb on + strandat 733.886 kb on - strandat 733.892 kb on - strandat 733.892 kb on - strandat 733.922 kb on + strandat 733.922 kb on + strandat 733.922 kb on + strandat 733.923 kb on + strandat 733.930 kb on - strandat 733.930 kb on - strandat 733.952 kb on - strandat 733.954 kb on - strandat 733.955 kb on - strandat 733.977 kb on + strandat 733.979 kb on - strandat 733.992 kb on + strandat 733.992 kb on + strandat 734.000 kb on - strandat 734.000 kb on - strandat 734.000 kb on - strandat 734.006 kb on + strandat 734.013 kb on - strandat 734.058 kb on - strandat 734.083 kb on - strandat 734.084 kb on - strandat 734.098 kb on + strandat 734.098 kb on + strandat 734.098 kb on + strandat 734.098 kb on + strandat 734.098 kb on + strandat 734.098 kb on + strandat 734.098 kb on + strandat 734.098 kb on + strandat 734.106 kb on - strandat 734.106 kb on - strandat 734.106 kb on - strandat 734.106 kb on - strandat 734.111 kb on - strandat 734.111 kb on - strandat 734.113 kb on - strandat 734.113 kb on - strandat 734.120 kb on - strandat 734.120 kb on - strandat 734.127 kb on - strandat 734.132 kb on + strandat 734.140 kb on - strandat 734.140 kb on - strandat 734.154 kb on + strandat 734.154 kb on + strandat 734.162 kb on - strandat 734.162 kb on - strandat 734.162 kb on - strandat 734.162 kb on - strandat 734.200 kb on + strandat 734.230 kb on + strand, within BWI76_RS03535at 734.361 kb on + strand, within BWI76_RS03535at 734.449 kb on + strand, within BWI76_RS03535at 734.503 kb on - strand, within BWI76_RS03535at 734.557 kb on - strand, within BWI76_RS03535at 734.609 kb on + strand, within BWI76_RS03535at 734.639 kb on - strand, within BWI76_RS03535at 734.644 kb on - strand, within BWI76_RS03535at 734.686 kb on + strand, within BWI76_RS03535at 734.691 kb on + strand, within BWI76_RS03535at 734.691 kb on + strand, within BWI76_RS03535at 734.691 kb on + strand, within BWI76_RS03535at 734.691 kb on + strand, within BWI76_RS03535at 734.691 kb on + strand, within BWI76_RS03535at 734.691 kb on + strand, within BWI76_RS03535at 734.694 kb on - strand, within BWI76_RS03535at 734.694 kb on - strand, within BWI76_RS03535at 734.699 kb on - strand, within BWI76_RS03535at 734.699 kb on - strand, within BWI76_RS03535at 734.699 kb on - strand, within BWI76_RS03535at 734.706 kb on + strand, within BWI76_RS03535at 734.744 kb on + strand, within BWI76_RS03535at 734.752 kb on - strand, within BWI76_RS03535at 734.752 kb on - strand, within BWI76_RS03535at 734.763 kb on + strand, within BWI76_RS03535at 734.836 kb on + strand, within BWI76_RS03535at 734.842 kb on - strand, within BWI76_RS03535at 734.844 kb on - strand, within BWI76_RS03535at 734.885 kb on + strand, within BWI76_RS03535at 734.887 kb on + strand, within BWI76_RS03535at 734.893 kb on + strand, within BWI76_RS03535at 734.940 kb on - strand, within BWI76_RS03535at 734.942 kb on - strand, within BWI76_RS03535at 734.989 kb on + strand, within BWI76_RS03535at 734.989 kb on + strand, within BWI76_RS03535at 735.009 kb on - strand, within BWI76_RS03535at 735.047 kb on + strand, within BWI76_RS03535at 735.144 kb on + strand, within BWI76_RS03535at 735.157 kb on - strand, within BWI76_RS03535at 735.159 kb on + strand, within BWI76_RS03535at 735.174 kb on - strand, within BWI76_RS03535at 735.176 kb on + strand, within BWI76_RS03535at 735.176 kb on + strand, within BWI76_RS03535at 735.176 kb on + strand, within BWI76_RS03535at 735.183 kb on - strand, within BWI76_RS03535at 735.232 kb on - strand, within BWI76_RS03535at 735.238 kb on + strand, within BWI76_RS03535at 735.266 kb on - strand, within BWI76_RS03535at 735.284 kb on - strand, within BWI76_RS03535at 735.294 kb on - strand, within BWI76_RS03535at 735.299 kb on - strand, within BWI76_RS03535at 735.299 kb on - strand, within BWI76_RS03535at 735.315 kb on + strandat 735.320 kb on + strandat 735.320 kb on + strandat 735.327 kb on - strandat 735.362 kb on + strandat 735.362 kb on + strandat 735.366 kb on + strandat 735.374 kb on + strandat 735.375 kb on - strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.395 kb on - strandat 735.395 kb on - strandat 735.395 kb on - strandat 735.395 kb on - strandat 735.395 kb on - strandat 735.395 kb on - strandat 735.395 kb on - strandat 735.395 kb on - strandat 735.395 kb on - strandat 735.409 kb on + strandat 735.433 kb on + strandat 735.435 kb on + strandat 735.435 kb on + strandat 735.435 kb on + strandat 735.435 kb on + strandat 735.435 kb on + strandat 735.435 kb on + strandat 735.443 kb on - strandat 735.443 kb on - strandat 735.443 kb on - strandat 735.443 kb on - strandat 735.443 kb on - strandat 735.443 kb on - strandat 735.468 kb on + strandat 735.481 kb on + strandat 735.596 kb on - strand, within BWI76_RS03540at 735.611 kb on + strand, within BWI76_RS03540at 735.612 kb on + strand, within BWI76_RS03540at 735.614 kb on - strand, within BWI76_RS03540at 735.634 kb on + strand, within BWI76_RS03540at 735.634 kb on + strand, within BWI76_RS03540at 735.634 kb on + strand, within BWI76_RS03540at 735.634 kb on + strand, within BWI76_RS03540at 735.639 kb on + strand, within BWI76_RS03540at 735.642 kb on - strand, within BWI76_RS03540at 735.674 kb on + strandat 735.682 kb on - strandat 735.688 kb on + strandat 735.697 kb on - strandat 735.770 kb on + strandat 735.803 kb on + strandat 735.806 kb on + strandat 735.827 kb on - strandat 735.880 kb on + strandat 735.912 kb on + strandat 735.912 kb on + strandat 735.913 kb on + strandat 735.914 kb on - strandat 735.920 kb on - strandat 735.964 kb on - strand, within BWI76_RS03545at 735.964 kb on - strand, within BWI76_RS03545at 735.974 kb on - strand, within BWI76_RS03545at 736.036 kb on + strand, within BWI76_RS03545at 736.038 kb on + strand, within BWI76_RS03545at 736.075 kb on + strand, within BWI76_RS03545at 736.075 kb on + strand, within BWI76_RS03545at 736.094 kb on + strand, within BWI76_RS03545at 736.102 kb on - strand, within BWI76_RS03545at 736.104 kb on + strand, within BWI76_RS03545at 736.112 kb on - strand, within BWI76_RS03545at 736.149 kb on + strand, within BWI76_RS03545

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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733,067 - BWI76_RS03530 0.32 +0.5
733,087 - BWI76_RS03530 0.33 -0.4
733,099 + BWI76_RS03530 0.34 -0.7
733,208 + BWI76_RS03530 0.43 -1.1
733,339 + BWI76_RS03530 0.53 -1.9
733,339 + BWI76_RS03530 0.53 -0.4
733,359 + BWI76_RS03530 0.55 -0.3
733,404 - BWI76_RS03530 0.58 +1.2
733,444 + BWI76_RS03530 0.62 -1.7
733,491 + BWI76_RS03530 0.65 +0.7
733,491 + BWI76_RS03530 0.65 -0.8
733,499 - BWI76_RS03530 0.66 +0.6
733,516 + BWI76_RS03530 0.67 +1.4
733,524 - BWI76_RS03530 0.68 +0.2
733,534 + BWI76_RS03530 0.69 +0.3
733,538 + BWI76_RS03530 0.69 +0.1
733,542 - BWI76_RS03530 0.69 +0.6
733,575 + BWI76_RS03530 0.72 -0.8
733,583 - BWI76_RS03530 0.73 -0.6
733,614 - BWI76_RS03530 0.75 -0.6
733,615 + BWI76_RS03530 0.75 -0.2
733,619 - BWI76_RS03530 0.75 +0.1
733,675 - BWI76_RS03530 0.80 -0.2
733,686 + BWI76_RS03530 0.81 +1.2
733,694 - BWI76_RS03530 0.81 +0.1
733,694 - BWI76_RS03530 0.81 +0.4
733,731 + BWI76_RS03530 0.84 +0.8
733,732 + BWI76_RS03530 0.84 -0.2
733,732 + BWI76_RS03530 0.84 +0.4
733,739 - BWI76_RS03530 0.85 +3.1
733,742 + BWI76_RS03530 0.85 -0.6
733,751 + BWI76_RS03530 0.86 -0.6
733,752 - BWI76_RS03530 0.86 +1.5
733,763 + BWI76_RS03530 0.87 +0.5
733,769 - BWI76_RS03530 0.87 +0.7
733,772 + BWI76_RS03530 0.88 -0.4
733,774 + BWI76_RS03530 0.88 -0.2
733,884 + -0.1
733,886 - -0.4
733,892 - -1.3
733,892 - -0.3
733,922 + +0.9
733,922 + +0.7
733,922 + +0.9
733,923 + -0.1
733,930 - -0.0
733,930 - +0.1
733,952 - -0.3
733,954 - +0.3
733,955 - +0.5
733,977 + +0.2
733,979 - +0.2
733,992 + +0.5
733,992 + +1.5
734,000 - -0.1
734,000 - +0.7
734,000 - +0.5
734,006 + -1.3
734,013 - +0.7
734,058 - -0.6
734,083 - -0.6
734,084 - +0.0
734,098 + +0.1
734,098 + -0.1
734,098 + +1.3
734,098 + -1.0
734,098 + -0.4
734,098 + +0.5
734,098 + +0.1
734,098 + +0.4
734,106 - +0.1
734,106 - -0.1
734,106 - +0.5
734,106 - -1.1
734,111 - +0.1
734,111 - +0.1
734,113 - -0.0
734,113 - +0.8
734,120 - -0.6
734,120 - +0.4
734,127 - +0.4
734,132 + +1.1
734,140 - -0.0
734,140 - -0.9
734,154 + -0.2
734,154 + -0.4
734,162 - -0.1
734,162 - +1.5
734,162 - -0.5
734,162 - -1.4
734,200 + +0.3
734,230 + BWI76_RS03535 0.12 +0.2
734,361 + BWI76_RS03535 0.21 -1.0
734,449 + BWI76_RS03535 0.28 +1.5
734,503 - BWI76_RS03535 0.32 -0.1
734,557 - BWI76_RS03535 0.35 +1.2
734,609 + BWI76_RS03535 0.39 -0.0
734,639 - BWI76_RS03535 0.41 -0.1
734,644 - BWI76_RS03535 0.42 +1.2
734,686 + BWI76_RS03535 0.45 +0.1
734,691 + BWI76_RS03535 0.45 +1.5
734,691 + BWI76_RS03535 0.45 -2.0
734,691 + BWI76_RS03535 0.45 +1.7
734,691 + BWI76_RS03535 0.45 -0.0
734,691 + BWI76_RS03535 0.45 +0.1
734,691 + BWI76_RS03535 0.45 +0.4
734,694 - BWI76_RS03535 0.45 +0.3
734,694 - BWI76_RS03535 0.45 -0.2
734,699 - BWI76_RS03535 0.46 +0.2
734,699 - BWI76_RS03535 0.46 +0.3
734,699 - BWI76_RS03535 0.46 -0.1
734,706 + BWI76_RS03535 0.46 +0.2
734,744 + BWI76_RS03535 0.49 -1.7
734,752 - BWI76_RS03535 0.49 -0.0
734,752 - BWI76_RS03535 0.49 +0.2
734,763 + BWI76_RS03535 0.50 -1.1
734,836 + BWI76_RS03535 0.56 -0.2
734,842 - BWI76_RS03535 0.56 -0.2
734,844 - BWI76_RS03535 0.56 +0.3
734,885 + BWI76_RS03535 0.59 +0.3
734,887 + BWI76_RS03535 0.59 +0.7
734,893 + BWI76_RS03535 0.60 +0.5
734,940 - BWI76_RS03535 0.63 +0.2
734,942 - BWI76_RS03535 0.63 +0.2
734,989 + BWI76_RS03535 0.67 +0.1
734,989 + BWI76_RS03535 0.67 -0.1
735,009 - BWI76_RS03535 0.68 -1.0
735,047 + BWI76_RS03535 0.71 +0.2
735,144 + BWI76_RS03535 0.78 +0.2
735,157 - BWI76_RS03535 0.79 -0.1
735,159 + BWI76_RS03535 0.79 +0.4
735,174 - BWI76_RS03535 0.80 +0.2
735,176 + BWI76_RS03535 0.80 -0.5
735,176 + BWI76_RS03535 0.80 -0.1
735,176 + BWI76_RS03535 0.80 +0.1
735,183 - BWI76_RS03535 0.80 -0.8
735,232 - BWI76_RS03535 0.84 +0.4
735,238 + BWI76_RS03535 0.84 -0.3
735,266 - BWI76_RS03535 0.86 -1.0
735,284 - BWI76_RS03535 0.88 -0.4
735,294 - BWI76_RS03535 0.88 -0.4
735,299 - BWI76_RS03535 0.89 -0.3
735,299 - BWI76_RS03535 0.89 +0.3
735,315 + -0.2
735,320 + +0.7
735,320 + -0.8
735,327 - -0.6
735,362 + -0.0
735,362 + -0.8
735,366 + +0.0
735,374 + -1.7
735,375 - +0.1
735,387 + -1.6
735,387 + +0.6
735,387 + -0.1
735,387 + -1.0
735,387 + -0.2
735,387 + +0.4
735,387 + -0.4
735,387 + -0.9
735,387 + -0.3
735,387 + +0.9
735,387 + +0.8
735,387 + -0.5
735,387 + +0.2
735,387 + -2.0
735,387 + -0.5
735,387 + -0.5
735,387 + -0.9
735,387 + -1.0
735,387 + +0.3
735,395 - -0.7
735,395 - +0.1
735,395 - -1.2
735,395 - +0.1
735,395 - +0.9
735,395 - -0.6
735,395 - -0.1
735,395 - -0.8
735,395 - -0.2
735,409 + +1.1
735,433 + -0.4
735,435 + -0.4
735,435 + +0.8
735,435 + -0.7
735,435 + -1.7
735,435 + +1.2
735,435 + -0.2
735,443 - -0.1
735,443 - -0.5
735,443 - -0.8
735,443 - +0.1
735,443 - -0.8
735,443 - +0.5
735,468 + -0.2
735,481 + -2.0
735,596 - BWI76_RS03540 0.20 -0.5
735,611 + BWI76_RS03540 0.35 -0.9
735,612 + BWI76_RS03540 0.36 -0.2
735,614 - BWI76_RS03540 0.39 +1.1
735,634 + BWI76_RS03540 0.59 -0.5
735,634 + BWI76_RS03540 0.59 -2.2
735,634 + BWI76_RS03540 0.59 +0.0
735,634 + BWI76_RS03540 0.59 +0.1
735,639 + BWI76_RS03540 0.65 -0.6
735,642 - BWI76_RS03540 0.68 -0.1
735,674 + +0.2
735,682 - -1.2
735,688 + -0.3
735,697 - -0.9
735,770 + -0.5
735,803 + -0.7
735,806 + -0.7
735,827 - -0.1
735,880 + +0.6
735,912 + +0.1
735,912 + +0.0
735,913 + -0.8
735,914 - -1.2
735,920 - -1.6
735,964 - BWI76_RS03545 0.15 -0.3
735,964 - BWI76_RS03545 0.15 +0.3
735,974 - BWI76_RS03545 0.18 -0.8
736,036 + BWI76_RS03545 0.37 +3.5
736,038 + BWI76_RS03545 0.38 -0.7
736,075 + BWI76_RS03545 0.49 +0.6
736,075 + BWI76_RS03545 0.49 +0.7
736,094 + BWI76_RS03545 0.55 +0.9
736,102 - BWI76_RS03545 0.57 -0.8
736,104 + BWI76_RS03545 0.58 +0.3
736,112 - BWI76_RS03545 0.60 +0.8
736,149 + BWI76_RS03545 0.71 +0.3

Or see this region's nucleotide sequence