Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02690 and BWI76_RS02695 overlap by 69 nucleotides BWI76_RS02695 and BWI76_RS02700 are separated by 305 nucleotides BWI76_RS02700 and BWI76_RS02705 are separated by 115 nucleotides BWI76_RS02705 and BWI76_RS02710 are separated by 82 nucleotides
BWI76_RS02690: BWI76_RS02690 - hypothetical protein, at 545,815 to 546,012
_RS02690
BWI76_RS02695: BWI76_RS02695 - peptidyl-prolyl cis-trans isomerase, at 545,944 to 546,564
_RS02695
BWI76_RS02700: BWI76_RS02700 - D-serine/D-alanine/glycine transporter, at 546,870 to 548,273
_RS02700
BWI76_RS02705: BWI76_RS02705 - iron-sulfur cluster repair di-iron protein, at 548,389 to 549,051
_RS02705
BWI76_RS02710: BWI76_RS02710 - EamA family transporter, at 549,134 to 550,105
_RS02710
Position (kb) 546
547
548
549 Strain fitness (log2 ratio) -1
0
1 at 545.966 kb on + strand at 546.155 kb on - strand, within BWI76_RS02695 at 546.318 kb on + strand, within BWI76_RS02695 at 546.480 kb on + strand, within BWI76_RS02695 at 546.480 kb on + strand, within BWI76_RS02695 at 546.519 kb on + strand at 546.597 kb on - strand at 546.621 kb on - strand at 546.708 kb on + strand at 546.792 kb on + strand at 546.804 kb on + strand at 546.806 kb on - strand at 546.841 kb on + strand at 546.879 kb on - strand at 546.889 kb on - strand at 546.889 kb on - strand at 546.905 kb on + strand at 546.913 kb on - strand at 546.982 kb on + strand at 547.000 kb on - strand at 547.250 kb on + strand, within BWI76_RS02700 at 547.258 kb on - strand, within BWI76_RS02700 at 547.541 kb on - strand, within BWI76_RS02700 at 547.549 kb on + strand, within BWI76_RS02700 at 547.559 kb on + strand, within BWI76_RS02700 at 547.683 kb on + strand, within BWI76_RS02700 at 547.698 kb on - strand, within BWI76_RS02700 at 547.784 kb on - strand, within BWI76_RS02700 at 547.825 kb on + strand, within BWI76_RS02700 at 547.833 kb on - strand at 547.835 kb on + strand, within BWI76_RS02700 at 547.848 kb on - strand at 547.924 kb on + strand, within BWI76_RS02700 at 548.096 kb on + strand, within BWI76_RS02700 at 548.120 kb on + strand, within BWI76_RS02700 at 548.215 kb on + strand at 548.218 kb on - strand at 548.258 kb on - strand at 548.408 kb on + strand at 548.408 kb on + strand at 548.519 kb on + strand, within BWI76_RS02705 at 548.554 kb on - strand, within BWI76_RS02705 at 548.615 kb on + strand, within BWI76_RS02705 at 548.615 kb on + strand, within BWI76_RS02705 at 548.684 kb on - strand, within BWI76_RS02705 at 548.701 kb on - strand, within BWI76_RS02705 at 549.182 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 545,966 + -0.1 546,155 - BWI76_RS02695 0.34 +0.9 546,318 + BWI76_RS02695 0.60 +0.4 546,480 + BWI76_RS02695 0.86 -0.2 546,480 + BWI76_RS02695 0.86 -0.9 546,519 + -1.3 546,597 - +0.7 546,621 - +0.8 546,708 + -1.2 546,792 + +1.4 546,804 + +0.0 546,806 - -0.2 546,841 + +0.4 546,879 - -0.1 546,889 - +0.4 546,889 - -1.3 546,905 + -0.0 546,913 - +0.3 546,982 + -0.4 547,000 - -0.1 547,250 + BWI76_RS02700 0.27 -0.0 547,258 - BWI76_RS02700 0.28 +1.1 547,541 - BWI76_RS02700 0.48 -0.3 547,549 + BWI76_RS02700 0.48 -0.5 547,559 + BWI76_RS02700 0.49 -0.4 547,683 + BWI76_RS02700 0.58 +0.2 547,698 - BWI76_RS02700 0.59 +0.2 547,784 - BWI76_RS02700 0.65 -0.3 547,825 + BWI76_RS02700 0.68 +0.0 547,833 - +1.6 547,835 + BWI76_RS02700 0.69 +0.2 547,848 - -0.0 547,924 + BWI76_RS02700 0.75 -0.0 548,096 + BWI76_RS02700 0.87 -0.4 548,120 + BWI76_RS02700 0.89 +0.1 548,215 + -0.4 548,218 - -0.3 548,258 - -0.4 548,408 + -0.7 548,408 + +0.7 548,519 + BWI76_RS02705 0.20 +1.4 548,554 - BWI76_RS02705 0.25 -0.9 548,615 + BWI76_RS02705 0.34 +0.2 548,615 + BWI76_RS02705 0.34 -0.6 548,684 - BWI76_RS02705 0.44 -0.4 548,701 - BWI76_RS02705 0.47 -1.0 549,182 + +0.1
Or see this region's nucleotide sequence