Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS01790

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS01780 and BWI76_RS01785 are separated by 5 nucleotidesBWI76_RS01785 and BWI76_RS01790 are separated by 38 nucleotidesBWI76_RS01790 and BWI76_RS01795 are separated by 121 nucleotidesBWI76_RS01795 and BWI76_RS01800 are separated by 282 nucleotides BWI76_RS01780: BWI76_RS01780 - SPFH domain / Band 7 family protein, at 363,171 to 364,298 _RS01780 BWI76_RS01785: BWI76_RS01785 - nucleotidyltransferase, at 364,304 to 365,092 _RS01785 BWI76_RS01790: BWI76_RS01790 - lysine-sensitive aspartokinase 3, at 365,131 to 366,480 _RS01790 BWI76_RS01795: BWI76_RS01795 - hypothetical protein, at 366,602 to 366,964 _RS01795 BWI76_RS01800: BWI76_RS01800 - glucose-6-phosphate isomerase, at 367,247 to 368,896 _RS01800 Position (kb) 365 366 367Strain fitness (log2 ratio) -1 0 1 2at 364.145 kb on + strand, within BWI76_RS01780at 364.211 kb on + strandat 364.216 kb on + strandat 364.216 kb on + strandat 364.454 kb on - strand, within BWI76_RS01785at 364.515 kb on + strand, within BWI76_RS01785at 364.854 kb on + strand, within BWI76_RS01785at 364.923 kb on - strand, within BWI76_RS01785at 364.928 kb on - strand, within BWI76_RS01785at 364.986 kb on + strand, within BWI76_RS01785at 364.996 kb on + strand, within BWI76_RS01785at 365.004 kb on - strand, within BWI76_RS01785at 365.065 kb on + strandat 365.273 kb on - strand, within BWI76_RS01790at 365.344 kb on - strand, within BWI76_RS01790at 365.381 kb on - strand, within BWI76_RS01790at 365.450 kb on - strand, within BWI76_RS01790at 365.481 kb on - strand, within BWI76_RS01790at 365.539 kb on + strand, within BWI76_RS01790at 365.547 kb on - strand, within BWI76_RS01790at 365.661 kb on + strand, within BWI76_RS01790at 365.689 kb on - strand, within BWI76_RS01790at 365.694 kb on - strand, within BWI76_RS01790at 365.790 kb on + strand, within BWI76_RS01790at 365.860 kb on - strand, within BWI76_RS01790at 365.908 kb on + strand, within BWI76_RS01790at 365.916 kb on - strand, within BWI76_RS01790at 365.916 kb on - strand, within BWI76_RS01790at 366.119 kb on - strand, within BWI76_RS01790at 366.166 kb on + strand, within BWI76_RS01790at 366.234 kb on + strand, within BWI76_RS01790at 366.242 kb on - strand, within BWI76_RS01790at 366.253 kb on + strand, within BWI76_RS01790at 366.418 kb on + strandat 366.663 kb on + strand, within BWI76_RS01795at 366.681 kb on + strand, within BWI76_RS01795at 366.801 kb on + strand, within BWI76_RS01795at 366.931 kb on + strandat 366.938 kb on - strandat 366.990 kb on - strandat 367.238 kb on + strandat 367.265 kb on + strandat 367.443 kb on - strand, within BWI76_RS01800

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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364,145 + BWI76_RS01780 0.86 -0.3
364,211 + -0.2
364,216 + +0.6
364,216 + +2.1
364,454 - BWI76_RS01785 0.19 -0.4
364,515 + BWI76_RS01785 0.27 -0.9
364,854 + BWI76_RS01785 0.70 +1.2
364,923 - BWI76_RS01785 0.78 -0.3
364,928 - BWI76_RS01785 0.79 -0.2
364,986 + BWI76_RS01785 0.86 -0.2
364,996 + BWI76_RS01785 0.88 -0.5
365,004 - BWI76_RS01785 0.89 -0.7
365,065 + -0.1
365,273 - BWI76_RS01790 0.11 -0.8
365,344 - BWI76_RS01790 0.16 +0.1
365,381 - BWI76_RS01790 0.19 +0.2
365,450 - BWI76_RS01790 0.24 +1.4
365,481 - BWI76_RS01790 0.26 +1.1
365,539 + BWI76_RS01790 0.30 +0.3
365,547 - BWI76_RS01790 0.31 +0.4
365,661 + BWI76_RS01790 0.39 +0.4
365,689 - BWI76_RS01790 0.41 +0.0
365,694 - BWI76_RS01790 0.42 +0.7
365,790 + BWI76_RS01790 0.49 -0.1
365,860 - BWI76_RS01790 0.54 -0.8
365,908 + BWI76_RS01790 0.58 +0.3
365,916 - BWI76_RS01790 0.58 -1.2
365,916 - BWI76_RS01790 0.58 -0.7
366,119 - BWI76_RS01790 0.73 +0.2
366,166 + BWI76_RS01790 0.77 +0.2
366,234 + BWI76_RS01790 0.82 -0.3
366,242 - BWI76_RS01790 0.82 -0.5
366,253 + BWI76_RS01790 0.83 -1.3
366,418 + -0.2
366,663 + BWI76_RS01795 0.17 -0.5
366,681 + BWI76_RS01795 0.22 -0.3
366,801 + BWI76_RS01795 0.55 -0.8
366,931 + +0.3
366,938 - -0.1
366,990 - -0.3
367,238 + +0.1
367,265 + +2.2
367,443 - BWI76_RS01800 0.12 +2.4

Or see this region's nucleotide sequence