Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29070

Experiment: Cholin acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29065 and AO356_29070 are separated by 485 nucleotidesAO356_29070 and AO356_29075 are separated by 16 nucleotides AO356_29065: AO356_29065 - hypothetical protein, at 6,757,801 to 6,758,931 _29065 AO356_29070: AO356_29070 - succinate-semialdehyde dehydrogenase, at 6,759,417 to 6,760,886 _29070 AO356_29075: AO356_29075 - dihydrodipicolinate synthetase, at 6,760,903 to 6,761,919 _29075 Position (kb) 6759 6760 6761Strain fitness (log2 ratio) -2 -1 0 1at 6758.916 kb on + strandat 6758.917 kb on - strandat 6758.946 kb on - strandat 6759.449 kb on - strandat 6759.449 kb on - strandat 6759.629 kb on - strand, within AO356_29070at 6759.901 kb on - strand, within AO356_29070at 6759.901 kb on - strand, within AO356_29070at 6759.901 kb on - strand, within AO356_29070at 6759.973 kb on + strand, within AO356_29070at 6759.974 kb on - strand, within AO356_29070at 6760.479 kb on + strand, within AO356_29070at 6760.799 kb on - strandat 6760.840 kb on + strandat 6760.841 kb on - strandat 6760.876 kb on - strandat 6760.876 kb on - strandat 6760.876 kb on - strandat 6761.066 kb on + strand, within AO356_29075at 6761.108 kb on + strand, within AO356_29075at 6761.337 kb on - strand, within AO356_29075at 6761.531 kb on + strand, within AO356_29075at 6761.531 kb on + strand, within AO356_29075at 6761.531 kb on + strand, within AO356_29075

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 20 mM
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6,758,916 + -0.2
6,758,917 - +0.1
6,758,946 - -1.0
6,759,449 - +0.1
6,759,449 - -0.1
6,759,629 - AO356_29070 0.14 +0.2
6,759,901 - AO356_29070 0.33 +0.4
6,759,901 - AO356_29070 0.33 -0.3
6,759,901 - AO356_29070 0.33 +1.6
6,759,973 + AO356_29070 0.38 +0.8
6,759,974 - AO356_29070 0.38 -0.4
6,760,479 + AO356_29070 0.72 +1.1
6,760,799 - +1.4
6,760,840 + +1.4
6,760,841 - +1.4
6,760,876 - +0.8
6,760,876 - +0.2
6,760,876 - +0.5
6,761,066 + AO356_29075 0.16 -2.3
6,761,108 + AO356_29075 0.20 +0.1
6,761,337 - AO356_29075 0.43 +0.2
6,761,531 + AO356_29075 0.62 -0.5
6,761,531 + AO356_29075 0.62 -1.3
6,761,531 + AO356_29075 0.62 -0.2

Or see this region's nucleotide sequence