Experiment: Cholin acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25550 and AO356_25555 are separated by 266 nucleotides AO356_25555 and AO356_25560 are separated by 139 nucleotides AO356_25560 and AO356_25565 are separated by 14 nucleotides AO356_25565 and AO356_25570 are separated by 12 nucleotides
AO356_25550: AO356_25550 - flavin oxidoreductase, at 5,776,620 to 5,777,561
_25550
AO356_25555: AO356_25555 - transcriptional regulator, at 5,777,828 to 5,778,250
_25555
AO356_25560: AO356_25560 - 2-keto-3-deoxy-L-rhamnonate aldolase, at 5,778,390 to 5,779,187
_25560
AO356_25565: AO356_25565 - 2-oxo-hepta-3-ene-1,7-dioate hydratase, at 5,779,202 to 5,780,005
_25565
AO356_25570: AO356_25570 - MFS transporter, at 5,780,018 to 5,781,322
_25570
Position (kb) 5778
5779
5780 Strain fitness (log2 ratio) -1
0
1 at 5777.699 kb on + strand at 5777.866 kb on - strand at 5777.866 kb on - strand at 5778.164 kb on + strand, within AO356_25555 at 5778.164 kb on + strand, within AO356_25555 at 5778.165 kb on - strand, within AO356_25555 at 5778.377 kb on + strand at 5778.378 kb on - strand at 5778.834 kb on + strand, within AO356_25560 at 5778.834 kb on + strand, within AO356_25560 at 5779.102 kb on + strand, within AO356_25560 at 5779.102 kb on + strand, within AO356_25560 at 5779.103 kb on - strand, within AO356_25560 at 5779.103 kb on - strand, within AO356_25560 at 5779.767 kb on + strand, within AO356_25565 at 5779.888 kb on - strand, within AO356_25565 at 5780.020 kb on - strand at 5780.090 kb on + strand at 5780.091 kb on - strand at 5780.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 20 mM remove 5,777,699 + -0.1 5,777,866 - +0.4 5,777,866 - -0.6 5,778,164 + AO356_25555 0.79 -0.1 5,778,164 + AO356_25555 0.79 -0.0 5,778,165 - AO356_25555 0.80 -0.5 5,778,377 + -0.3 5,778,378 - +0.1 5,778,834 + AO356_25560 0.56 +1.6 5,778,834 + AO356_25560 0.56 -0.4 5,779,102 + AO356_25560 0.89 +1.1 5,779,102 + AO356_25560 0.89 +1.3 5,779,103 - AO356_25560 0.89 +0.2 5,779,103 - AO356_25560 0.89 +0.6 5,779,767 + AO356_25565 0.70 +0.1 5,779,888 - AO356_25565 0.85 +1.3 5,780,020 - +0.4 5,780,090 + +0.1 5,780,091 - -0.7 5,780,095 - -0.4
Or see this region's nucleotide sequence