Strain Fitness in Shewanella loihica PV-4 around Shew_2803

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2802 and Shew_2803 are separated by 9 nucleotidesShew_2803 and Shew_2804 are separated by 284 nucleotides Shew_2802: Shew_2802 - periplasmic sensory protein associated with the TorRS two-component regulatory system (RefSeq), at 3,320,273 to 3,321,436 _2802 Shew_2803: Shew_2803 - DNA-binding transcriptional regulator TorR (RefSeq), at 3,321,446 to 3,322,171 _2803 Shew_2804: Shew_2804 - type IV pilus assembly PilZ (RefSeq), at 3,322,456 to 3,322,824 _2804 Position (kb) 3321 3322 3323Strain fitness (log2 ratio) -2 -1 0 1at 3320.574 kb on + strand, within Shew_2802at 3320.592 kb on - strand, within Shew_2802at 3320.638 kb on - strand, within Shew_2802at 3320.874 kb on - strand, within Shew_2802at 3320.874 kb on - strand, within Shew_2802at 3320.881 kb on + strand, within Shew_2802at 3320.889 kb on - strand, within Shew_2802at 3320.889 kb on - strand, within Shew_2802at 3321.326 kb on - strandat 3321.430 kb on + strandat 3321.430 kb on + strandat 3321.438 kb on - strandat 3321.438 kb on - strandat 3321.613 kb on - strand, within Shew_2803at 3321.636 kb on + strand, within Shew_2803at 3322.055 kb on - strand, within Shew_2803at 3322.208 kb on - strandat 3322.762 kb on + strand, within Shew_2804at 3323.142 kb on + strandat 3323.142 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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3,320,574 + Shew_2802 0.26 +0.4
3,320,592 - Shew_2802 0.27 -0.2
3,320,638 - Shew_2802 0.31 -0.3
3,320,874 - Shew_2802 0.52 -1.1
3,320,874 - Shew_2802 0.52 -0.2
3,320,881 + Shew_2802 0.52 -0.3
3,320,889 - Shew_2802 0.53 +0.3
3,320,889 - Shew_2802 0.53 +1.1
3,321,326 - +0.2
3,321,430 + +0.4
3,321,430 + +0.0
3,321,438 - +0.2
3,321,438 - +0.5
3,321,613 - Shew_2803 0.23 -0.2
3,321,636 + Shew_2803 0.26 -0.3
3,322,055 - Shew_2803 0.84 -1.9
3,322,208 - +0.2
3,322,762 + Shew_2804 0.83 -0.0
3,323,142 + +0.3
3,323,142 + +1.0

Or see this region's nucleotide sequence