Strain Fitness in Shewanella loihica PV-4 around Shew_2744

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2743 and Shew_2744 are separated by 24 nucleotidesShew_2744 and Shew_2745 are separated by 743 nucleotides Shew_2743: Shew_2743 - collagenase (RefSeq), at 3,242,067 to 3,242,948 _2743 Shew_2744: Shew_2744 - putative esterase (RefSeq), at 3,242,973 to 3,243,902 _2744 Shew_2745: Shew_2745 - hypothetical protein (RefSeq), at 3,244,646 to 3,245,404 _2745 Position (kb) 3242 3243 3244Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3242.698 kb on + strand, within Shew_2743at 3243.226 kb on + strand, within Shew_2744at 3243.285 kb on + strand, within Shew_2744at 3243.293 kb on - strand, within Shew_2744at 3243.334 kb on + strand, within Shew_2744at 3243.411 kb on + strand, within Shew_2744at 3243.419 kb on - strand, within Shew_2744at 3243.619 kb on + strand, within Shew_2744at 3243.697 kb on - strand, within Shew_2744at 3243.771 kb on - strand, within Shew_2744at 3243.909 kb on + strandat 3243.917 kb on - strandat 3243.917 kb on - strandat 3243.954 kb on + strandat 3244.058 kb on + strandat 3244.217 kb on - strandat 3244.639 kb on - strandat 3244.668 kb on + strandat 3244.676 kb on - strandat 3244.789 kb on + strand, within Shew_2745at 3244.831 kb on + strand, within Shew_2745at 3244.840 kb on + strand, within Shew_2745

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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3,242,698 + Shew_2743 0.72 +0.3
3,243,226 + Shew_2744 0.27 -0.2
3,243,285 + Shew_2744 0.34 -0.1
3,243,293 - Shew_2744 0.34 -1.4
3,243,334 + Shew_2744 0.39 -0.1
3,243,411 + Shew_2744 0.47 -0.1
3,243,419 - Shew_2744 0.48 -0.9
3,243,619 + Shew_2744 0.69 +0.0
3,243,697 - Shew_2744 0.78 +0.0
3,243,771 - Shew_2744 0.86 +0.1
3,243,909 + -4.2
3,243,917 - +0.0
3,243,917 - -0.6
3,243,954 + -1.9
3,244,058 + -0.5
3,244,217 - -0.8
3,244,639 - -0.1
3,244,668 + +0.2
3,244,676 - -0.4
3,244,789 + Shew_2745 0.19 -1.4
3,244,831 + Shew_2745 0.24 +0.1
3,244,840 + Shew_2745 0.26 +0.0

Or see this region's nucleotide sequence