Strain Fitness in Shewanella loihica PV-4 around Shew_2171

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2170 and Shew_2171 are separated by 424 nucleotidesShew_2171 and Shew_2172 are separated by 70 nucleotides Shew_2170: Shew_2170 - endonuclease/exonuclease/phosphatase (RefSeq), at 2,523,232 to 2,526,069 _2170 Shew_2171: Shew_2171 - peptidase T2, asparaginase 2 (RefSeq), at 2,526,494 to 2,527,540 _2171 Shew_2172: Shew_2172 - surface antigen (D15) (RefSeq), at 2,527,611 to 2,529,521 _2172 Position (kb) 2526 2527 2528Strain fitness (log2 ratio) -3 -2 -1 0 1at 2525.727 kb on + strand, within Shew_2170at 2525.735 kb on - strand, within Shew_2170at 2525.762 kb on + strand, within Shew_2170at 2525.954 kb on + strandat 2526.995 kb on - strand, within Shew_2171at 2527.162 kb on + strand, within Shew_2171at 2527.230 kb on - strand, within Shew_2171at 2527.271 kb on - strand, within Shew_2171at 2527.365 kb on + strand, within Shew_2171at 2527.522 kb on + strandat 2527.820 kb on + strand, within Shew_2172

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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2,525,727 + Shew_2170 0.88 -0.1
2,525,735 - Shew_2170 0.88 +0.1
2,525,762 + Shew_2170 0.89 +0.8
2,525,954 + -0.0
2,526,995 - Shew_2171 0.48 -0.5
2,527,162 + Shew_2171 0.64 -1.0
2,527,230 - Shew_2171 0.70 -2.5
2,527,271 - Shew_2171 0.74 +0.4
2,527,365 + Shew_2171 0.83 -1.5
2,527,522 + -0.8
2,527,820 + Shew_2172 0.11 -3.4

Or see this region's nucleotide sequence