Strain Fitness in Shewanella loihica PV-4 around Shew_1562

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrmU and Shew_1561 are separated by 177 nucleotidesShew_1561 and Shew_1562 are separated by 11 nucleotidesShew_1562 and Shew_1563 are separated by 272 nucleotides Shew_1560: trmU - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq), at 1,790,570 to 1,791,685 trmU Shew_1561: Shew_1561 - NUDIX hydrolase (RefSeq), at 1,791,863 to 1,792,312 _1561 Shew_1562: Shew_1562 - pseudouridylate synthase (RefSeq), at 1,792,324 to 1,793,118 _1562 Shew_1563: Shew_1563 - isocitrate dehydrogenase, NADP-dependent (RefSeq), at 1,793,391 to 1,795,610 _1563 Position (kb) 1792 1793 1794Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1791.965 kb on - strand, within Shew_1561at 1791.986 kb on + strand, within Shew_1561at 1792.060 kb on - strand, within Shew_1561at 1792.179 kb on - strand, within Shew_1561at 1792.642 kb on - strand, within Shew_1562at 1792.895 kb on + strand, within Shew_1562at 1793.821 kb on - strand, within Shew_1563

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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1,791,965 - Shew_1561 0.23 +0.9
1,791,986 + Shew_1561 0.27 -0.1
1,792,060 - Shew_1561 0.44 +0.1
1,792,179 - Shew_1561 0.70 +0.0
1,792,642 - Shew_1562 0.40 -2.1
1,792,895 + Shew_1562 0.72 -0.5
1,793,821 - Shew_1563 0.19 +3.6

Or see this region's nucleotide sequence