Strain Fitness in Shewanella loihica PV-4 around Shew_1201
Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bacitracin 0.25 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,393,205 | + | Shew_1200 | 0.80 | -1.8 | |
1,393,234 | - | Shew_1200 | 0.81 | -4.6 | |
1,393,513 | - | -6.1 | |||
1,393,816 | - | -0.7 | |||
1,393,860 | - | -0.7 | |||
1,393,898 | - | -0.5 | |||
1,394,062 | + | rumA | Shew_1201 | 0.15 | -1.1 |
1,394,229 | - | rumA | Shew_1201 | 0.28 | -0.8 |
1,394,535 | - | rumA | Shew_1201 | 0.51 | -1.1 |
1,394,642 | - | rumA | Shew_1201 | 0.59 | -0.4 |
1,394,863 | + | rumA | Shew_1201 | 0.75 | -1.5 |
1,395,105 | + | -2.4 | |||
1,395,422 | - | -0.2 | |||
1,395,616 | + | Shew_1202 | 0.12 | -0.2 | |
1,395,698 | + | Shew_1202 | 0.15 | -0.2 | |
1,395,714 | + | Shew_1202 | 0.16 | +0.1 |
Or see this region's nucleotide sequence