Strain Fitness in Shewanella loihica PV-4 around Shew_1108

Experiment: Bacitracin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bacitracin 0.25 mg/ml
1,277,270	+				-0.9
1,277,278	-				-0.2
1,277,278	-				+0.4
1,277,280	+				+0.3
1,277,299	+				+0.3
1,277,307	-				-1.3
1,277,307	+				-0.1
1,277,308	+				-0.7
1,277,316	-				-0.9
1,277,342	+				-0.1
1,277,342	+				+0.0
1,277,351	+				+0.3
1,277,358	-				-0.0
1,277,368	+				-0.1
1,277,376	-				-1.3
1,277,376	-				-0.8
1,277,376	-				-0.0
1,277,376	-				+0.7
1,277,377	+				-0.3
1,277,377	+				+0.1
1,277,377	+				+0.0
1,277,377	+				-0.8
1,277,378	-				+0.0
1,277,384	+				-0.7
1,277,385	-				+0.1
1,277,385	-				-2.5
1,277,385	-				-0.2
1,277,385	-				+0.0
1,277,401	-				-0.2
1,277,408	+				-0.1
1,277,425	+				-0.9
1,277,425	+				+0.0
1,277,425	+				+0.0
1,277,425	+				+0.4
1,277,425	+				-0.7
1,277,425	+				+0.8
1,277,425	+				+0.7
1,277,425	+				+0.2
1,277,425	+				+0.0
1,277,425	+				+0.3
1,277,425	+				+0.3
1,277,425	+				+0.1
1,277,426	+				-0.7
1,277,433	-				+0.4
1,277,433	-				-0.6
1,277,433	-				-0.1
1,277,433	-				+0.1
1,277,433	-				-0.2
1,277,433	-				+0.1
1,277,433	-				+0.3
1,277,433	-				-0.2
1,277,435	-				+0.1
1,277,436	+				-0.3
1,277,440	-				-1.2
1,277,444	+				+0.0
1,277,452	+				+0.2
1,277,452	+				+0.3
1,277,452	+				+0.8
1,277,452	+				-0.9
1,277,452	-				+0.5
1,277,452	+				-0.5
1,277,452	+				+0.3
1,277,452	+				-0.1
1,277,452	+				-0.4
1,277,452	+				+0.6
1,277,452	-				-1.2
1,277,460	-				-0.5
1,277,460	-				-0.1
1,277,460	-				+1.1
1,277,460	-				+0.4
1,277,460	+				+0.0
1,277,460	-				+0.6
1,277,460	+				-0.2
1,277,460	-				+0.2
1,277,460	-				-0.8
1,277,460	-				-0.4
1,277,460	-				-0.1
1,277,460	-				-0.3
1,277,467	-				+1.2
1,277,467	+				+0.5
1,277,475	-				-0.3
1,277,476	-				+0.4
1,277,566	+				+3.7
1,277,585	+		Shew_1107	0.14	-0.7
1,277,632	+		Shew_1107	0.26	-0.7
1,277,653	+		Shew_1107	0.31	-1.8
1,277,676	-		Shew_1107	0.37	+0.1
1,277,676	-		Shew_1107	0.37	-0.5
1,277,684	-		Shew_1107	0.39	+1.0
1,277,690	+		Shew_1107	0.40	+0.5
1,277,736	+		Shew_1107	0.52	+0.0
1,277,744	-		Shew_1107	0.54	-0.6
1,277,744	-		Shew_1107	0.54	-0.9
1,277,748	+		Shew_1107	0.55	+0.9
1,277,756	-		Shew_1107	0.57	+0.3
1,277,776	-		Shew_1107	0.62	+0.2
1,277,779	+		Shew_1107	0.63	-0.5
1,277,828	+		Shew_1107	0.76	-0.2
1,277,828	-		Shew_1107	0.76	-0.1
1,277,889	-				+0.8
1,277,931	+				+0.1
1,277,939	-				-0.1
1,277,962	+				-0.2
1,277,967	+				+0.1
1,277,967	+				+0.4
1,277,967	+				+0.4
1,277,967	+				-0.9
1,277,967	+				-0.5
1,277,967	+				+0.5
1,277,970	-				+0.3
1,277,975	-				+0.3
1,277,975	-				+0.1
1,277,975	-				+1.9
1,277,975	-				-3.6
1,277,975	-				+0.2
1,277,995	+				-0.3
1,278,003	-				+0.9
1,278,003	-				-0.3
1,278,003	-				-1.1
1,278,003	-				+0.4
1,278,142	+				+0.0
1,278,150	-				+1.3
1,278,152	+				-0.0
1,278,152	+				-1.4
1,278,152	+				-2.8
1,278,162	+				+0.1
1,278,162	+				+1.0
1,278,165	-				+4.5
1,278,171	+				+0.2
1,278,227	+				+0.1
1,278,294	+				+0.2
1,278,294	+				+0.5
1,278,297	-				+0.8
1,278,297	-				+0.3
1,278,309	+		Shew_1108	0.10	+0.5
1,278,391	+		Shew_1108	0.27	+0.7
1,278,403	+		Shew_1108	0.29	+0.4
1,278,403	+		Shew_1108	0.29	+0.3
1,278,411	-		Shew_1108	0.31	+0.1
1,278,441	+		Shew_1108	0.37	-0.2
1,278,449	-		Shew_1108	0.39	+0.4
1,278,491	-		Shew_1108	0.47	+0.7
1,278,497	-		Shew_1108	0.48	-0.1
1,278,536	-		Shew_1108	0.56	-0.0
1,278,545	+		Shew_1108	0.58	-1.0
1,278,612	-		Shew_1108	0.72	+0.5
1,278,615	+		Shew_1108	0.72	+0.5
1,278,615	+		Shew_1108	0.72	+0.5
1,278,615	+		Shew_1108	0.72	+0.5
1,278,615	+		Shew_1108	0.72	+0.7
1,278,615	+		Shew_1108	0.72	+0.5
1,278,623	-		Shew_1108	0.74	-0.3
1,278,623	-		Shew_1108	0.74	+0.2
1,278,623	-		Shew_1108	0.74	+0.9
1,278,623	-		Shew_1108	0.74	+0.3
1,278,623	-		Shew_1108	0.74	+0.1
1,278,669	+		Shew_1108	0.83	+0.3
1,278,677	-		Shew_1108	0.85	+0.3
1,278,707	+				+0.2
1,278,731	-				+0.2
1,278,783	-				-0.1
1,278,868	+				+1.9
1,278,869	-				+0.1
1,278,876	+				-0.0
1,278,876	-				+0.2
1,278,884	-				+0.1
1,278,884	-				+0.0
1,278,884	-				-0.0
1,278,886	+				-1.9
1,278,886	+				+0.2
1,278,894	-				+0.5
1,278,979	+		Shew_1109	0.18	+0.9
1,278,979	+		Shew_1109	0.18	+0.1
1,278,979	+		Shew_1109	0.18	+0.1
1,278,979	+		Shew_1109	0.18	+0.7
1,278,979	+		Shew_1109	0.18	+0.3
1,278,979	+		Shew_1109	0.18	+0.8
1,278,984	+		Shew_1109	0.19	+0.2
1,278,987	-		Shew_1109	0.19	-0.5
1,278,987	-		Shew_1109	0.19	+0.4
1,278,987	-		Shew_1109	0.19	+0.3
1,278,987	-		Shew_1109	0.19	+1.6
1,278,987	-		Shew_1109	0.19	+0.0
1,278,991	+		Shew_1109	0.20	-1.4
1,278,991	+		Shew_1109	0.20	-0.0
1,278,991	+		Shew_1109	0.20	+0.1
1,278,992	+		Shew_1109	0.20	-0.4
1,278,999	-		Shew_1109	0.22	+0.5
1,278,999	-		Shew_1109	0.22	+0.3
1,278,999	-		Shew_1109	0.22	+0.2
1,279,022	-		Shew_1109	0.26	-0.3
1,279,204	+		Shew_1109	0.62	+0.5
1,279,210	+		Shew_1109	0.63	+0.4
1,279,212	-		Shew_1109	0.63	+0.2
1,279,218	-		Shew_1109	0.65	-0.2
1,279,295	-		Shew_1109	0.80	-0.3
1,279,301	-		Shew_1109	0.81	-0.4
1,279,301	-		Shew_1109	0.81	-0.8
1,279,334	+		Shew_1109	0.87	+0.1
1,279,334	+		Shew_1109	0.87	+0.1
1,279,334	+		Shew_1109	0.87	+0.1
1,279,342	-		Shew_1109	0.89	-0.2
1,279,342	-		Shew_1109	0.89	-0.3
1,279,344	+		Shew_1109	0.89	+0.2
1,279,407	-				+0.9
1,279,414	-				+0.2
1,279,414	+				-0.0
1,279,424	-				+0.2
1,279,428	-				+0.0
1,279,428	-				-0.7
1,279,428	-				+0.3
1,279,434	+				-0.3
1,279,444	+				+0.0
1,279,447	-				-1.1
1,279,472	+				+0.9
1,279,480	-				+0.0
1,279,480	-				-0.0
1,279,480	-				+1.2
1,279,480	-				+0.1
1,279,480	-				+1.3
1,279,491	+				-0.1
1,279,517	-				-0.9
1,279,517	-				+0.1
1,279,590	-				+0.8
1,279,666	-				+0.1
1,279,677	-				+0.8
1,279,702	+		Shew_1110	0.15	+0.3