Strain Fitness in Shewanella loihica PV-4 around Shew_1015
Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bacitracin 0.25 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,174,232 | + | Shew_1014 | 0.72 | +0.2 | |
1,174,573 | + | +0.6 | |||
1,174,598 | + | Shew_1015 | 0.10 | -0.9 | |
1,174,966 | - | Shew_1015 | 0.32 | -0.2 | |
1,175,302 | + | Shew_1015 | 0.51 | +0.4 | |
1,175,416 | + | Shew_1015 | 0.58 | +0.8 | |
1,176,013 | + | +0.1 | |||
1,176,829 | + | Shew_1016 | 0.67 | -1.6 | |
1,176,854 | - | Shew_1016 | 0.70 | -1.5 | |
1,176,895 | - | Shew_1016 | 0.74 | -1.5 | |
1,176,983 | - | Shew_1016 | 0.84 | -0.3 |
Or see this region's nucleotide sequence