Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0774 and Shew_0775 are separated by 144 nucleotides Shew_0775 and Shew_0776 are separated by 99 nucleotides Shew_0776 and Shew_0777 are separated by 267 nucleotides
Shew_0774: Shew_0774 - peptidase S9B dipeptidylpeptidase IV subunit (RefSeq), at 884,145 to 886,397
_0774
Shew_0775: Shew_0775 - TetR family transcriptional regulator (RefSeq), at 886,542 to 887,099
_0775
Shew_0776: Shew_0776 - deaminase-reductase domain-containing protein (RefSeq), at 887,199 to 887,735
_0776
Shew_0777: Shew_0777 - two-component response regulator (RefSeq), at 888,003 to 888,722
_0777
Position (kb) 886
887
888 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 885.562 kb on - strand, within Shew_0774 at 885.689 kb on + strand, within Shew_0774 at 885.907 kb on + strand, within Shew_0774 at 886.036 kb on - strand, within Shew_0774 at 886.108 kb on - strand, within Shew_0774 at 886.177 kb on - strand at 886.271 kb on + strand at 886.274 kb on - strand at 886.405 kb on + strand at 886.413 kb on - strand at 886.852 kb on + strand, within Shew_0775 at 886.866 kb on - strand, within Shew_0775 at 886.892 kb on + strand, within Shew_0775 at 886.893 kb on + strand, within Shew_0775 at 886.901 kb on - strand, within Shew_0775 at 886.988 kb on + strand, within Shew_0775 at 887.184 kb on + strand at 887.190 kb on - strand at 887.281 kb on - strand, within Shew_0776 at 887.393 kb on + strand, within Shew_0776 at 887.401 kb on - strand, within Shew_0776 at 887.401 kb on - strand, within Shew_0776 at 887.401 kb on - strand, within Shew_0776 at 887.401 kb on - strand, within Shew_0776 at 887.401 kb on - strand, within Shew_0776 at 887.401 kb on - strand, within Shew_0776 at 887.420 kb on + strand, within Shew_0776 at 887.426 kb on + strand, within Shew_0776 at 887.526 kb on + strand, within Shew_0776 at 887.526 kb on - strand, within Shew_0776 at 887.536 kb on - strand, within Shew_0776 at 887.536 kb on - strand, within Shew_0776 at 887.536 kb on - strand, within Shew_0776 at 887.561 kb on - strand, within Shew_0776 at 887.688 kb on + strand at 887.696 kb on - strand at 887.906 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 885,562 - Shew_0774 0.63 +0.5 885,689 + Shew_0774 0.69 -0.5 885,907 + Shew_0774 0.78 +0.4 886,036 - Shew_0774 0.84 -0.2 886,108 - Shew_0774 0.87 -0.0 886,177 - -0.0 886,271 + -0.5 886,274 - +0.0 886,405 + +0.2 886,413 - +0.2 886,852 + Shew_0775 0.56 +2.2 886,866 - Shew_0775 0.58 +2.1 886,892 + Shew_0775 0.63 +1.8 886,893 + Shew_0775 0.63 +2.0 886,901 - Shew_0775 0.64 +2.0 886,988 + Shew_0775 0.80 +1.9 887,184 + +0.0 887,190 - +0.1 887,281 - Shew_0776 0.15 +0.2 887,393 + Shew_0776 0.36 +0.7 887,401 - Shew_0776 0.38 +1.9 887,401 - Shew_0776 0.38 -0.2 887,401 - Shew_0776 0.38 -0.4 887,401 - Shew_0776 0.38 -0.1 887,401 - Shew_0776 0.38 +0.2 887,401 - Shew_0776 0.38 +0.4 887,420 + Shew_0776 0.41 +0.3 887,426 + Shew_0776 0.42 +0.1 887,526 + Shew_0776 0.61 +0.1 887,526 - Shew_0776 0.61 +0.5 887,536 - Shew_0776 0.63 +1.2 887,536 - Shew_0776 0.63 -0.2 887,536 - Shew_0776 0.63 +0.3 887,561 - Shew_0776 0.67 -0.4 887,688 + +0.3 887,696 - +0.1 887,906 + +3.8
Or see this region's nucleotide sequence