Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0768 and Shew_0769 are separated by 508 nucleotides Shew_0769 and Shew_0770 are separated by 78 nucleotides
Shew_0768: Shew_0768 - methyltransferase small (RefSeq), at 876,459 to 877,190
_0768
Shew_0769: Shew_0769 - branched-chain amino acid transport system II carrier protein (RefSeq), at 877,699 to 879,030
_0769
Shew_0770: Shew_0770 - tyrosine recombinase XerD (RefSeq), at 879,109 to 880,020
_0770
Position (kb) 877
878
879
880 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 876.865 kb on - strand, within Shew_0768 at 876.983 kb on - strand, within Shew_0768 at 877.213 kb on - strand at 877.506 kb on + strand at 877.741 kb on + strand at 877.849 kb on - strand, within Shew_0769 at 877.987 kb on - strand, within Shew_0769 at 878.054 kb on + strand, within Shew_0769 at 878.092 kb on - strand, within Shew_0769 at 878.245 kb on - strand, within Shew_0769 at 878.302 kb on + strand, within Shew_0769 at 878.310 kb on - strand, within Shew_0769 at 878.774 kb on - strand, within Shew_0769 at 878.860 kb on + strand, within Shew_0769 at 878.943 kb on + strand at 879.257 kb on + strand, within Shew_0770 at 879.354 kb on - strand, within Shew_0770 at 879.539 kb on + strand, within Shew_0770 at 879.549 kb on + strand, within Shew_0770 at 879.701 kb on + strand, within Shew_0770 at 879.803 kb on + strand, within Shew_0770 at 879.918 kb on + strand, within Shew_0770 at 879.993 kb on + strand at 880.008 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 876,865 - Shew_0768 0.55 -0.7 876,983 - Shew_0768 0.72 -0.0 877,213 - +0.4 877,506 + +0.1 877,741 + +1.1 877,849 - Shew_0769 0.11 +0.5 877,987 - Shew_0769 0.22 +0.4 878,054 + Shew_0769 0.27 -0.2 878,092 - Shew_0769 0.30 +0.4 878,245 - Shew_0769 0.41 +0.4 878,302 + Shew_0769 0.45 +0.2 878,310 - Shew_0769 0.46 +0.0 878,774 - Shew_0769 0.81 -0.4 878,860 + Shew_0769 0.87 +0.1 878,943 + +0.1 879,257 + Shew_0770 0.16 -2.9 879,354 - Shew_0770 0.27 -4.8 879,539 + Shew_0770 0.47 -0.7 879,549 + Shew_0770 0.48 -4.1 879,701 + Shew_0770 0.65 -4.3 879,803 + Shew_0770 0.76 -2.6 879,918 + Shew_0770 0.89 -3.6 879,993 + -2.8 880,008 + +0.3
Or see this region's nucleotide sequence