Strain Fitness in Shewanella loihica PV-4 around Shew_0578
Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Bacitracin 0.25 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 654,308 | - | Shew_0577 | 0.76 | -0.8 | |
| 654,488 | - | +0.1 | |||
| 654,556 | - | +0.0 | |||
| 654,635 | - | -0.4 | |||
| 654,881 | - | +0.0 | |||
| 655,313 | - | +1.1 | |||
| 655,383 | - | argD | Shew_0578 | 0.15 | -0.6 |
| 655,609 | + | argD | Shew_0578 | 0.34 | +0.9 |
| 655,697 | - | argD | Shew_0578 | 0.41 | -0.1 |
| 655,772 | - | argD | Shew_0578 | 0.47 | +0.4 |
| 656,056 | + | argD | Shew_0578 | 0.71 | +0.5 |
| 656,128 | - | argD | Shew_0578 | 0.77 | -1.7 |
| 656,284 | + | argD | Shew_0578 | 0.89 | +0.6 |
| 656,292 | - | +0.6 | |||
| 656,292 | - | +0.4 | |||
| 656,535 | - | +0.2 | |||
| 656,877 | + | Shew_0579 | 0.32 | +0.2 | |
| 656,885 | - | Shew_0579 | 0.33 | +0.1 | |
| 657,112 | - | Shew_0579 | 0.55 | +0.6 | |
| 657,233 | + | Shew_0579 | 0.67 | -0.3 | |
| 657,265 | + | Shew_0579 | 0.70 | +0.5 |
Or see this region's nucleotide sequence