Strain Fitness in Shewanella loihica PV-4 around Shew_0493
Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bacitracin 0.25 mg/ml |
---|---|---|---|---|---|
remove | |||||
549,307 | + | Shew_0492 | 0.48 | +0.0 | |
549,469 | + | Shew_0492 | 0.58 | +0.1 | |
549,510 | + | Shew_0492 | 0.61 | -0.8 | |
549,863 | - | Shew_0492 | 0.83 | -0.3 | |
549,863 | - | Shew_0492 | 0.83 | -0.1 | |
549,959 | + | Shew_0492 | 0.89 | -0.2 | |
549,967 | - | Shew_0492 | 0.89 | -1.6 | |
550,217 | - | +0.4 | |||
550,224 | + | -0.3 | |||
550,268 | - | -0.0 | |||
550,616 | + | Shew_0493 | 0.63 | +1.0 | |
550,616 | + | Shew_0493 | 0.63 | +0.9 | |
550,917 | + | +0.9 | |||
551,301 | + | Shew_0494 | 0.34 | -2.0 | |
551,302 | + | Shew_0494 | 0.34 | -0.4 | |
551,505 | + | Shew_0494 | 0.61 | -0.1 | |
551,722 | + | Shew_0494 | 0.90 | -0.0 | |
551,722 | + | Shew_0494 | 0.90 | +0.1 |
Or see this region's nucleotide sequence