Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0392 and Shew_0393 are separated by 2 nucleotides Shew_0393 and Shew_0394 are separated by 32 nucleotides Shew_0394 and Shew_0395 are separated by 73 nucleotides
Shew_0392: Shew_0392 - type II secretion system protein E (RefSeq), at 442,454 to 444,214
_0392
Shew_0393: Shew_0393 - type II secretion system protein (RefSeq), at 444,217 to 445,434
_0393
Shew_0394: Shew_0394 - hypothetical protein (RefSeq), at 445,467 to 445,958
_0394
Shew_0395: Shew_0395 - methylation site containing protein (RefSeq), at 446,032 to 446,667
_0395
Position (kb) 444
445
446 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 443.258 kb on - strand, within Shew_0392 at 443.349 kb on - strand, within Shew_0392 at 443.473 kb on + strand, within Shew_0392 at 443.727 kb on + strand, within Shew_0392 at 444.058 kb on - strand at 444.099 kb on + strand at 444.348 kb on + strand, within Shew_0393 at 444.466 kb on - strand, within Shew_0393 at 444.486 kb on + strand, within Shew_0393 at 444.731 kb on - strand, within Shew_0393 at 444.731 kb on - strand, within Shew_0393 at 444.755 kb on - strand, within Shew_0393 at 444.834 kb on - strand, within Shew_0393 at 445.058 kb on + strand, within Shew_0393 at 445.066 kb on - strand, within Shew_0393 at 445.165 kb on - strand, within Shew_0393 at 445.221 kb on - strand, within Shew_0393 at 445.383 kb on + strand at 445.456 kb on + strand at 445.739 kb on + strand, within Shew_0394 at 445.976 kb on - strand at 446.335 kb on + strand, within Shew_0395
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 443,258 - Shew_0392 0.46 -0.3 443,349 - Shew_0392 0.51 +0.6 443,473 + Shew_0392 0.58 +0.6 443,727 + Shew_0392 0.72 +0.9 444,058 - +0.2 444,099 + +0.5 444,348 + Shew_0393 0.11 +0.2 444,466 - Shew_0393 0.20 +0.3 444,486 + Shew_0393 0.22 +0.8 444,731 - Shew_0393 0.42 +0.4 444,731 - Shew_0393 0.42 +0.4 444,755 - Shew_0393 0.44 +0.2 444,834 - Shew_0393 0.51 +1.7 445,058 + Shew_0393 0.69 +0.2 445,066 - Shew_0393 0.70 +0.8 445,165 - Shew_0393 0.78 +0.5 445,221 - Shew_0393 0.82 +0.7 445,383 + +0.5 445,456 + -3.1 445,739 + Shew_0394 0.55 -0.4 445,976 - +0.5 446,335 + Shew_0395 0.48 -0.3
Or see this region's nucleotide sequence