Strain Fitness in Shewanella loihica PV-4 around Shew_0205

Experiment: Bacitracin 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0204 and Shew_0205 are separated by 53 nucleotidesShew_0205 and Shew_0206 are separated by 93 nucleotides Shew_0204: Shew_0204 - ornithine carbamoyltransferase (RefSeq), at 217,135 to 218,040 _0204 Shew_0205: Shew_0205 - argininosuccinate synthase (RefSeq), at 218,094 to 219,317 _0205 Shew_0206: Shew_0206 - argininosuccinate lyase (RefSeq), at 219,411 to 220,772 _0206 Position (kb) 218 219 220Strain fitness (log2 ratio) -2 -1 0 1at 217.263 kb on - strand, within Shew_0204at 217.373 kb on - strand, within Shew_0204at 217.517 kb on - strand, within Shew_0204at 217.826 kb on + strand, within Shew_0204at 218.237 kb on + strand, within Shew_0205at 218.822 kb on + strand, within Shew_0205at 218.822 kb on + strand, within Shew_0205at 218.822 kb on + strand, within Shew_0205at 218.822 kb on + strand, within Shew_0205at 218.830 kb on - strand, within Shew_0205at 218.944 kb on + strand, within Shew_0205at 219.103 kb on + strand, within Shew_0205at 219.152 kb on + strand, within Shew_0205at 219.152 kb on + strand, within Shew_0205at 219.402 kb on - strandat 219.812 kb on + strand, within Shew_0206at 219.957 kb on + strand, within Shew_0206at 220.015 kb on + strand, within Shew_0206

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
remove
217,263 - Shew_0204 0.14 +0.1
217,373 - Shew_0204 0.26 -0.7
217,517 - Shew_0204 0.42 -1.8
217,826 + Shew_0204 0.76 -0.4
218,237 + Shew_0205 0.12 +1.0
218,822 + Shew_0205 0.59 +0.5
218,822 + Shew_0205 0.59 +0.2
218,822 + Shew_0205 0.59 +0.1
218,822 + Shew_0205 0.59 +0.1
218,830 - Shew_0205 0.60 +0.1
218,944 + Shew_0205 0.69 -0.3
219,103 + Shew_0205 0.82 +1.6
219,152 + Shew_0205 0.86 +0.1
219,152 + Shew_0205 0.86 -0.0
219,402 - +0.5
219,812 + Shew_0206 0.29 +1.5
219,957 + Shew_0206 0.40 +0.5
220,015 + Shew_0206 0.44 +0.1

Or see this region's nucleotide sequence