Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0797

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0796 and Dshi_0797 overlap by 4 nucleotidesDshi_0797 and Dshi_0798 overlap by 11 nucleotides Dshi_0796: Dshi_0796 - ornithine carbamoyltransferase (RefSeq), at 802,986 to 803,912 _0796 Dshi_0797: Dshi_0797 - GCN5-related N-acetyltransferase (RefSeq), at 803,909 to 804,442 _0797 Dshi_0798: Dshi_0798 - acetylornithine and succinylornithine aminotransferase (RefSeq), at 804,432 to 805,613 _0798 Position (kb) 803 804 805Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 803.137 kb on - strand, within Dshi_0796at 803.385 kb on - strand, within Dshi_0796at 803.387 kb on + strand, within Dshi_0796at 803.410 kb on + strand, within Dshi_0796at 803.502 kb on - strand, within Dshi_0796at 803.601 kb on + strand, within Dshi_0796at 803.781 kb on + strand, within Dshi_0796at 803.809 kb on + strand, within Dshi_0796at 803.874 kb on + strandat 803.953 kb on - strandat 804.048 kb on + strand, within Dshi_0797at 804.095 kb on - strand, within Dshi_0797at 804.220 kb on - strand, within Dshi_0797at 804.447 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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803,137 - Dshi_0796 0.16 -0.7
803,385 - Dshi_0796 0.43 -3.7
803,387 + Dshi_0796 0.43 -3.6
803,410 + Dshi_0796 0.46 -3.3
803,502 - Dshi_0796 0.56 -4.2
803,601 + Dshi_0796 0.66 -2.9
803,781 + Dshi_0796 0.86 -1.8
803,809 + Dshi_0796 0.89 -5.6
803,874 + -3.2
803,953 - -0.7
804,048 + Dshi_0797 0.26 -0.3
804,095 - Dshi_0797 0.35 -0.2
804,220 - Dshi_0797 0.58 -0.1
804,447 - -0.4

Or see this region's nucleotide sequence