Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0021 and Dshi_0022 are separated by 22 nucleotides Dshi_0022 and Dshi_0023 are separated by 43 nucleotides Dshi_0023 and Dshi_0024 are separated by 94 nucleotides
Dshi_0020: Dshi_0020 - putative transcriptional regulator, CadC (RefSeq), at 25,297 to 26,019
_0020
Dshi_0021: Dshi_0021 - hypothetical protein (RefSeq), at 25,973 to 26,377
_0021
Dshi_0022: Dshi_0022 - hypothetical protein (RefSeq), at 26,400 to 26,954
_0022
Dshi_0023: Dshi_0023 - Ribonuclease H (RefSeq), at 26,998 to 27,618
_0023
Dshi_0024: Dshi_0024 - DNA methylase N-4/N-6 domain protein (RefSeq), at 27,713 to 28,819
_0024
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 26.214 kb on - strand, within Dshi_0021 at 26.232 kb on - strand, within Dshi_0021 at 26.360 kb on + strand at 26.457 kb on - strand, within Dshi_0022 at 26.578 kb on - strand, within Dshi_0022 at 26.578 kb on - strand, within Dshi_0022 at 26.642 kb on + strand, within Dshi_0022 at 26.665 kb on + strand, within Dshi_0022 at 26.679 kb on - strand, within Dshi_0022 at 26.864 kb on - strand, within Dshi_0022 at 26.883 kb on + strand, within Dshi_0022 at 26.928 kb on - strand at 26.995 kb on + strand at 27.219 kb on + strand, within Dshi_0023 at 27.256 kb on - strand, within Dshi_0023 at 27.315 kb on - strand, within Dshi_0023 at 27.353 kb on + strand, within Dshi_0023 at 27.374 kb on - strand, within Dshi_0023 at 27.374 kb on - strand, within Dshi_0023 at 27.395 kb on - strand, within Dshi_0023 at 27.558 kb on - strand at 27.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 26,214 - Dshi_0021 0.60 -0.3 26,232 - Dshi_0021 0.64 -0.1 26,360 + +1.8 26,457 - Dshi_0022 0.10 +0.2 26,578 - Dshi_0022 0.32 +0.2 26,578 - Dshi_0022 0.32 -0.3 26,642 + Dshi_0022 0.44 -0.6 26,665 + Dshi_0022 0.48 +1.2 26,679 - Dshi_0022 0.50 -0.4 26,864 - Dshi_0022 0.84 -2.1 26,883 + Dshi_0022 0.87 -0.6 26,928 - -1.3 26,995 + -0.3 27,219 + Dshi_0023 0.36 +0.1 27,256 - Dshi_0023 0.42 -0.0 27,315 - Dshi_0023 0.51 -0.5 27,353 + Dshi_0023 0.57 -2.9 27,374 - Dshi_0023 0.61 -1.1 27,374 - Dshi_0023 0.61 -1.0 27,395 - Dshi_0023 0.64 -0.6 27,558 - +1.5 27,568 - -0.3
Or see this region's nucleotide sequence