Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0001

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0001 and Dshi_0002 are separated by 214 nucleotides Dshi_0001: Dshi_0001 - glutamate synthase, small subunit (RefSeq), at 128 to 1,567 _0001 Dshi_0002: Dshi_0002 - Glutamate synthase (ferredoxin) (RefSeq), at 1,782 to 6,320 _0002 Position (kb) 0 1 2Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 0.102 kb on - strandat 0.102 kb on - strandat 0.102 kb on - strandat 0.102 kb on - strandat 0.114 kb on + strandat 0.171 kb on - strandat 0.270 kb on + strandat 0.341 kb on - strand, within Dshi_0001at 0.546 kb on - strand, within Dshi_0001at 0.646 kb on + strand, within Dshi_0001at 0.683 kb on + strand, within Dshi_0001at 0.705 kb on + strand, within Dshi_0001at 0.736 kb on - strand, within Dshi_0001at 0.839 kb on - strand, within Dshi_0001at 0.887 kb on - strand, within Dshi_0001at 1.268 kb on + strand, within Dshi_0001at 1.551 kb on - strandat 1.592 kb on - strandat 1.622 kb on + strandat 1.629 kb on - strandat 1.696 kb on + strandat 1.755 kb on + strandat 1.757 kb on + strandat 1.769 kb on - strandat 1.828 kb on - strandat 2.018 kb on - strandat 2.034 kb on + strandat 2.044 kb on + strandat 2.047 kb on + strandat 2.288 kb on + strand, within Dshi_0002at 2.295 kb on + strand, within Dshi_0002at 2.380 kb on - strand, within Dshi_0002at 2.381 kb on + strand, within Dshi_0002at 2.424 kb on + strand, within Dshi_0002

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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102 - -2.0
102 - -0.4
102 - -2.8
102 - -0.7
114 + -2.4
171 - -2.9
270 + -3.3
341 - Dshi_0001 0.15 -0.6
546 - Dshi_0001 0.29 -2.1
646 + Dshi_0001 0.36 -1.6
683 + Dshi_0001 0.39 -3.0
705 + Dshi_0001 0.40 -2.1
736 - Dshi_0001 0.42 -3.4
839 - Dshi_0001 0.49 -2.3
887 - Dshi_0001 0.53 -4.0
1,268 + Dshi_0001 0.79 -2.6
1,551 - -0.5
1,592 - -0.3
1,622 + +0.2
1,629 - -0.3
1,696 + -2.7
1,755 + -3.0
1,757 + -2.4
1,769 - -2.9
1,828 - -2.1
2,018 - -0.6
2,034 + -3.6
2,044 + -0.9
2,047 + -0.6
2,288 + Dshi_0002 0.11 -3.6
2,295 + Dshi_0002 0.11 -3.4
2,380 - Dshi_0002 0.13 -2.3
2,381 + Dshi_0002 0.13 -3.7
2,424 + Dshi_0002 0.14 -2.0

Or see this region's nucleotide sequence