Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpsO and truB are separated by 24 nucleotides truB and DVU0506 are separated by 4 nucleotides DVU0506 and DVU0507 are separated by 17 nucleotides DVU0507 and infB are separated by 103 nucleotides
DVU0504: rpsO - ribosomal protein S15 (TIGR), at 577,418 to 577,687
rpsO
DVU0505: truB - tRNA pseudouridine synthase B (TIGR), at 577,712 to 578,626
truB
DVU0506: DVU0506 - DHH family protein (TIGR), at 578,631 to 579,632
DVU0506
DVU0507: DVU0507 - conserved hypothetical protein (TIGR), at 579,650 to 579,940
DVU0507
DVU0508: infB - translation initiation factor IF-2 (TIGR), at 580,044 to 583,283
infB
Position (kb) 578
579
580 Strain fitness (log2 ratio) -1
0
1
2 at 578.039 kb on + strand, within truB at 578.061 kb on - strand, within truB at 578.252 kb on - strand, within truB at 578.270 kb on - strand, within truB at 578.339 kb on + strand, within truB at 578.389 kb on - strand, within truB at 578.401 kb on + strand, within truB at 578.423 kb on - strand, within truB at 578.436 kb on + strand, within truB at 578.534 kb on - strand, within truB at 578.580 kb on + strand at 578.593 kb on - strand at 578.642 kb on - strand at 578.654 kb on - strand at 578.729 kb on - strand at 578.781 kb on - strand, within DVU0506 at 578.846 kb on + strand, within DVU0506 at 578.936 kb on - strand, within DVU0506 at 579.160 kb on + strand, within DVU0506 at 579.224 kb on + strand, within DVU0506 at 579.372 kb on + strand, within DVU0506 at 579.372 kb on + strand, within DVU0506 at 579.388 kb on + strand, within DVU0506 at 579.429 kb on - strand, within DVU0506 at 579.429 kb on - strand, within DVU0506 at 579.429 kb on - strand, within DVU0506 at 579.677 kb on + strand at 579.717 kb on - strand, within DVU0507 at 579.737 kb on + strand, within DVU0507 at 579.853 kb on + strand, within DVU0507 at 579.921 kb on - strand at 579.966 kb on - strand at 580.013 kb on - strand at 580.044 kb on + strand at 580.044 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate remove 578,039 + truB DVU0505 0.36 +1.2 578,061 - truB DVU0505 0.38 -0.4 578,252 - truB DVU0505 0.59 -0.5 578,270 - truB DVU0505 0.61 -0.1 578,339 + truB DVU0505 0.69 -0.5 578,389 - truB DVU0505 0.74 +1.2 578,401 + truB DVU0505 0.75 +0.1 578,423 - truB DVU0505 0.78 +0.4 578,436 + truB DVU0505 0.79 +1.8 578,534 - truB DVU0505 0.90 +0.0 578,580 + -0.0 578,593 - +0.2 578,642 - -0.6 578,654 - -0.6 578,729 - +0.9 578,781 - DVU0506 0.15 +2.7 578,846 + DVU0506 0.21 +0.4 578,936 - DVU0506 0.30 +0.3 579,160 + DVU0506 0.53 +1.6 579,224 + DVU0506 0.59 +0.9 579,372 + DVU0506 0.74 -0.5 579,372 + DVU0506 0.74 +2.2 579,388 + DVU0506 0.76 -0.7 579,429 - DVU0506 0.80 +0.2 579,429 - DVU0506 0.80 +0.9 579,429 - DVU0506 0.80 +0.2 579,677 + -0.1 579,717 - DVU0507 0.23 +0.0 579,737 + DVU0507 0.30 +0.8 579,853 + DVU0507 0.70 +2.2 579,921 - +0.4 579,966 - +1.0 580,013 - -0.9 580,044 + -0.0 580,044 + -0.1
Or see this region's nucleotide sequence