Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0499

Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0498 and DVU0499 are separated by 229 nucleotidesDVU0499 and selB are separated by 349 nucleotides DVU0498: DVU0498 - iron-sulfur cluster-binding protein, putative (TIGR), at 568,761 to 570,266 DVU0498 DVU0499: DVU0499 - conserved hypothetical protein TIGR00149 (TIGR), at 570,496 to 570,891 DVU0499 DVU0500: selB - selenocysteine-specific translation elongation factor (TIGR), at 571,241 to 573,169 selB Position (kb) 570 571Strain fitness (log2 ratio) -2 -1 0 1 2 3at 569.708 kb on - strand, within DVU0498at 569.872 kb on - strand, within DVU0498at 569.911 kb on + strand, within DVU0498at 569.973 kb on - strand, within DVU0498at 569.995 kb on + strand, within DVU0498at 570.003 kb on + strand, within DVU0498at 570.032 kb on + strand, within DVU0498at 570.090 kb on + strand, within DVU0498at 570.090 kb on + strand, within DVU0498at 570.096 kb on + strand, within DVU0498at 570.152 kb on + strandat 570.168 kb on + strandat 570.289 kb on + strandat 570.310 kb on + strandat 570.392 kb on - strandat 570.398 kb on - strandat 570.412 kb on + strandat 570.412 kb on + strandat 570.420 kb on - strandat 570.423 kb on + strandat 570.425 kb on - strandat 570.561 kb on - strand, within DVU0499at 570.572 kb on + strand, within DVU0499at 570.720 kb on - strand, within DVU0499at 570.866 kb on + strandat 570.874 kb on - strandat 570.876 kb on + strandat 570.942 kb on - strandat 570.945 kb on - strandat 570.951 kb on + strandat 570.969 kb on - strandat 570.981 kb on - strandat 571.118 kb on + strandat 571.228 kb on - strandat 571.235 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate
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569,708 - DVU0498 0.63 +0.1
569,872 - DVU0498 0.74 -0.3
569,911 + DVU0498 0.76 -2.3
569,973 - DVU0498 0.80 +0.8
569,995 + DVU0498 0.82 +0.1
570,003 + DVU0498 0.82 -1.8
570,032 + DVU0498 0.84 +0.4
570,090 + DVU0498 0.88 -0.6
570,090 + DVU0498 0.88 -0.0
570,096 + DVU0498 0.89 -0.4
570,152 + -0.3
570,168 + -0.2
570,289 + -0.1
570,310 + -1.0
570,392 - -1.1
570,398 - -1.1
570,412 + -0.3
570,412 + -0.0
570,420 - +0.0
570,423 + -0.0
570,425 - +1.2
570,561 - DVU0499 0.16 -0.0
570,572 + DVU0499 0.19 +0.7
570,720 - DVU0499 0.57 -0.1
570,866 + -1.1
570,874 - -0.1
570,876 + +0.0
570,942 - -0.0
570,945 - +0.1
570,951 + -1.8
570,969 - -0.2
570,981 - +3.2
571,118 + +1.2
571,228 - -0.6
571,235 - +0.4

Or see this region's nucleotide sequence