Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0299 and DVU0300 overlap by 119 nucleotides DVU0300 and DVU0301 are separated by 165 nucleotides DVU0301 and DVU0302 are separated by 219 nucleotides
DVU0299: DVU0299 - anaerobic ribonucleoside-triphosphate reductase, putative (TIGR), at 345,642 to 347,687
DVU0299
DVU0300: DVU0300 - radical SAM domain protein (TIGR), at 347,569 to 348,306
DVU0300
DVU0301: DVU0301 - hypothetical protein (TIGR), at 348,472 to 348,621
DVU0301
DVU0302: DVU0302 - chemotaxis protein CheX, putative (TIGR), at 348,841 to 349,308
DVU0302
Position (kb) 347
348
349 Strain fitness (log2 ratio) -1
0
1
2 at 346.607 kb on - strand, within DVU0299 at 346.613 kb on - strand, within DVU0299 at 346.739 kb on - strand, within DVU0299 at 346.752 kb on - strand, within DVU0299 at 346.812 kb on + strand, within DVU0299 at 346.827 kb on + strand, within DVU0299 at 346.832 kb on + strand, within DVU0299 at 346.915 kb on + strand, within DVU0299 at 346.961 kb on + strand, within DVU0299 at 346.969 kb on - strand, within DVU0299 at 347.016 kb on + strand, within DVU0299 at 347.032 kb on - strand, within DVU0299 at 347.094 kb on - strand, within DVU0299 at 347.138 kb on - strand, within DVU0299 at 347.212 kb on + strand, within DVU0299 at 347.241 kb on - strand, within DVU0299 at 347.354 kb on - strand, within DVU0299 at 347.486 kb on - strand at 347.499 kb on + strand at 347.514 kb on - strand at 347.696 kb on + strand, within DVU0300 at 347.704 kb on - strand, within DVU0300 at 348.440 kb on - strand at 348.575 kb on - strand, within DVU0301 at 348.610 kb on + strand at 348.644 kb on - strand at 348.764 kb on + strand at 348.772 kb on + strand at 348.841 kb on - strand at 348.928 kb on + strand, within DVU0302 at 348.956 kb on + strand, within DVU0302 at 348.965 kb on - strand, within DVU0302 at 348.973 kb on + strand, within DVU0302 at 349.059 kb on - strand, within DVU0302 at 349.213 kb on - strand, within DVU0302 at 349.213 kb on - strand, within DVU0302 at 349.235 kb on - strand, within DVU0302 at 349.247 kb on - strand, within DVU0302 at 349.306 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate remove 346,607 - DVU0299 0.47 +0.6 346,613 - DVU0299 0.47 -0.2 346,739 - DVU0299 0.54 -0.2 346,752 - DVU0299 0.54 -0.3 346,812 + DVU0299 0.57 +2.2 346,827 + DVU0299 0.58 -0.2 346,832 + DVU0299 0.58 -0.1 346,915 + DVU0299 0.62 +0.2 346,961 + DVU0299 0.64 -0.1 346,969 - DVU0299 0.65 +0.6 347,016 + DVU0299 0.67 -0.1 347,032 - DVU0299 0.68 -0.2 347,094 - DVU0299 0.71 +0.2 347,138 - DVU0299 0.73 -0.3 347,212 + DVU0299 0.77 -0.2 347,241 - DVU0299 0.78 +0.2 347,354 - DVU0299 0.84 -0.8 347,486 - -0.3 347,499 + +0.2 347,514 - -0.4 347,696 + DVU0300 0.17 +1.0 347,704 - DVU0300 0.18 +0.2 348,440 - +0.2 348,575 - DVU0301 0.69 +0.1 348,610 + +0.8 348,644 - -0.3 348,764 + +0.1 348,772 + -0.3 348,841 - -0.5 348,928 + DVU0302 0.19 -0.3 348,956 + DVU0302 0.25 -0.3 348,965 - DVU0302 0.26 +0.8 348,973 + DVU0302 0.28 -0.3 349,059 - DVU0302 0.47 -0.8 349,213 - DVU0302 0.79 +0.2 349,213 - DVU0302 0.79 -1.3 349,235 - DVU0302 0.84 -0.3 349,247 - DVU0302 0.87 +1.2 349,306 + +0.2
Or see this region's nucleotide sequence