Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt oppF and oppD are separated by 10 nucleotides oppD and oppC are separated by 2 nucleotides oppC and DVU0168 are separated by 1 nucleotides
DVU0165: oppF - oligopeptide/dipeptide ABC transporter, ATP-binding protein (TIGR), at 205,350 to 206,363
oppF
DVU0166: oppD - oligopeptide/dipeptide ABC transporter, ATP-binding protein (TIGR), at 206,374 to 207,360
oppD
DVU0167: oppC - oligopeptide/dipeptide ABC transporter, permease protein (TIGR), at 207,363 to 208,283
oppC
DVU0168: DVU0168 - oligopeptide/dipeptide ABC transporter, permease protein (TIGR), at 208,285 to 209,262
DVU0168
Position (kb) 207
208
209 Strain fitness (log2 ratio) -2
-1
0
1 at 206.402 kb on - strand at 206.425 kb on - strand at 206.446 kb on - strand at 206.450 kb on + strand at 206.498 kb on + strand, within oppD at 206.498 kb on + strand, within oppD at 206.553 kb on - strand, within oppD at 206.560 kb on + strand, within oppD at 206.560 kb on + strand, within oppD at 206.609 kb on + strand, within oppD at 206.609 kb on + strand, within oppD at 206.609 kb on + strand, within oppD at 206.609 kb on + strand, within oppD at 206.617 kb on - strand, within oppD at 206.630 kb on + strand, within oppD at 206.638 kb on - strand, within oppD at 206.653 kb on + strand, within oppD at 206.653 kb on - strand, within oppD at 206.741 kb on - strand, within oppD at 206.742 kb on - strand, within oppD at 206.761 kb on - strand, within oppD at 206.811 kb on - strand, within oppD at 206.846 kb on + strand, within oppD at 206.851 kb on + strand, within oppD at 206.856 kb on + strand, within oppD at 206.856 kb on - strand, within oppD at 206.864 kb on - strand, within oppD at 206.907 kb on - strand, within oppD at 206.913 kb on + strand, within oppD at 206.930 kb on + strand, within oppD at 206.938 kb on + strand, within oppD at 206.938 kb on + strand, within oppD at 206.938 kb on + strand, within oppD at 206.938 kb on + strand, within oppD at 206.946 kb on - strand, within oppD at 206.993 kb on + strand, within oppD at 207.156 kb on - strand, within oppD at 207.156 kb on - strand, within oppD at 207.192 kb on + strand, within oppD at 207.228 kb on + strand, within oppD at 207.377 kb on + strand at 207.416 kb on + strand at 207.424 kb on - strand at 207.424 kb on - strand at 207.502 kb on + strand, within oppC at 207.719 kb on + strand, within oppC at 207.745 kb on + strand, within oppC at 208.020 kb on - strand, within oppC at 208.186 kb on + strand, within oppC at 208.272 kb on - strand at 208.438 kb on + strand, within DVU0168 at 208.498 kb on + strand, within DVU0168 at 208.501 kb on - strand, within DVU0168 at 208.546 kb on + strand, within DVU0168 at 208.630 kb on - strand, within DVU0168 at 208.639 kb on + strand, within DVU0168 at 208.718 kb on + strand, within DVU0168 at 208.757 kb on + strand, within DVU0168 at 208.889 kb on + strand, within DVU0168 at 208.915 kb on - strand, within DVU0168 at 209.050 kb on - strand, within DVU0168 at 209.068 kb on + strand, within DVU0168 at 209.125 kb on - strand, within DVU0168 at 209.135 kb on - strand, within DVU0168 at 209.135 kb on - strand, within DVU0168 at 209.232 kb on + strand at 209.240 kb on - strand at 209.253 kb on + strand at 209.283 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate remove 206,402 - -0.8 206,425 - -1.3 206,446 - -0.8 206,450 + -0.3 206,498 + oppD DVU0166 0.13 -0.3 206,498 + oppD DVU0166 0.13 -0.3 206,553 - oppD DVU0166 0.18 +0.1 206,560 + oppD DVU0166 0.19 -0.1 206,560 + oppD DVU0166 0.19 +0.3 206,609 + oppD DVU0166 0.24 +0.4 206,609 + oppD DVU0166 0.24 -0.4 206,609 + oppD DVU0166 0.24 -1.1 206,609 + oppD DVU0166 0.24 -2.5 206,617 - oppD DVU0166 0.25 -0.0 206,630 + oppD DVU0166 0.26 -0.0 206,638 - oppD DVU0166 0.27 +0.9 206,653 + oppD DVU0166 0.28 -0.0 206,653 - oppD DVU0166 0.28 -0.1 206,741 - oppD DVU0166 0.37 -1.3 206,742 - oppD DVU0166 0.37 -0.8 206,761 - oppD DVU0166 0.39 +0.4 206,811 - oppD DVU0166 0.44 -0.7 206,846 + oppD DVU0166 0.48 -0.3 206,851 + oppD DVU0166 0.48 -0.2 206,856 + oppD DVU0166 0.49 -0.4 206,856 - oppD DVU0166 0.49 +0.3 206,864 - oppD DVU0166 0.50 -0.0 206,907 - oppD DVU0166 0.54 -0.0 206,913 + oppD DVU0166 0.55 +0.2 206,930 + oppD DVU0166 0.56 -0.0 206,938 + oppD DVU0166 0.57 +0.9 206,938 + oppD DVU0166 0.57 +1.1 206,938 + oppD DVU0166 0.57 +0.7 206,938 + oppD DVU0166 0.57 +0.2 206,946 - oppD DVU0166 0.58 +0.1 206,993 + oppD DVU0166 0.63 -1.5 207,156 - oppD DVU0166 0.79 -0.0 207,156 - oppD DVU0166 0.79 +0.8 207,192 + oppD DVU0166 0.83 +0.1 207,228 + oppD DVU0166 0.87 -1.7 207,377 + -0.3 207,416 + -0.5 207,424 - -0.2 207,424 - -0.1 207,502 + oppC DVU0167 0.15 +0.6 207,719 + oppC DVU0167 0.39 +0.7 207,745 + oppC DVU0167 0.41 +0.1 208,020 - oppC DVU0167 0.71 -0.5 208,186 + oppC DVU0167 0.89 +0.1 208,272 - -0.0 208,438 + DVU0168 0.16 -0.3 208,498 + DVU0168 0.22 -0.5 208,501 - DVU0168 0.22 -0.6 208,546 + DVU0168 0.27 -1.1 208,630 - DVU0168 0.35 -0.2 208,639 + DVU0168 0.36 +0.3 208,718 + DVU0168 0.44 -0.1 208,757 + DVU0168 0.48 -0.4 208,889 + DVU0168 0.62 +0.2 208,915 - DVU0168 0.64 -0.2 209,050 - DVU0168 0.78 -0.2 209,068 + DVU0168 0.80 +0.1 209,125 - DVU0168 0.86 -0.4 209,135 - DVU0168 0.87 -0.2 209,135 - DVU0168 0.87 -0.2 209,232 + +0.1 209,240 - +0.3 209,253 + +0.0 209,283 - +0.7
Or see this region's nucleotide sequence