Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3097 and DVU3098 are separated by 136 nucleotides DVU3098 and tolQ-2 are separated by 43 nucleotides tolQ-2 and tolR are separated by 9 nucleotides
DVU3097: DVU3097 - outer membrane efflux protein (TIGR), at 3,238,096 to 3,239,415
DVU3097
DVU3098: DVU3098 - hypothetical protein (TIGR), at 3,239,552 to 3,239,755
DVU3098
DVU3099: tolQ-2 - tolQ protein (TIGR), at 3,239,799 to 3,240,491
tolQ-2
DVU3100: tolR - biopolymer transport protein, ExbD/TolR family (TIGR), at 3,240,501 to 3,240,920
tolR
Position (kb)
3239
3240 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3238.554 kb on + strand, within DVU3097 at 3238.564 kb on + strand, within DVU3097 at 3238.579 kb on + strand, within DVU3097 at 3238.581 kb on + strand, within DVU3097 at 3238.589 kb on - strand, within DVU3097 at 3238.589 kb on - strand, within DVU3097 at 3238.651 kb on + strand, within DVU3097 at 3238.678 kb on - strand, within DVU3097 at 3238.678 kb on - strand, within DVU3097 at 3238.719 kb on - strand, within DVU3097 at 3238.792 kb on - strand, within DVU3097 at 3238.802 kb on - strand, within DVU3097 at 3238.826 kb on + strand, within DVU3097 at 3238.840 kb on - strand, within DVU3097 at 3238.907 kb on + strand, within DVU3097 at 3238.907 kb on + strand, within DVU3097 at 3238.910 kb on - strand, within DVU3097 at 3238.915 kb on - strand, within DVU3097 at 3238.915 kb on - strand, within DVU3097 at 3238.929 kb on + strand, within DVU3097 at 3238.929 kb on + strand, within DVU3097 at 3238.978 kb on + strand, within DVU3097 at 3239.047 kb on - strand, within DVU3097 at 3239.056 kb on - strand, within DVU3097 at 3239.071 kb on - strand, within DVU3097 at 3239.075 kb on + strand, within DVU3097 at 3239.198 kb on + strand, within DVU3097 at 3239.206 kb on - strand, within DVU3097 at 3239.242 kb on + strand, within DVU3097 at 3239.244 kb on - strand, within DVU3097 at 3239.255 kb on - strand, within DVU3097 at 3239.392 kb on - strand at 3239.547 kb on - strand at 3239.605 kb on - strand, within DVU3098 at 3239.672 kb on + strand, within DVU3098 at 3239.698 kb on + strand, within DVU3098 at 3239.706 kb on - strand, within DVU3098 at 3239.718 kb on + strand, within DVU3098 at 3239.783 kb on + strand at 3240.431 kb on - strand at 3240.464 kb on + strand at 3240.497 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate remove 3,238,554 + DVU3097 0.35 -0.1 3,238,564 + DVU3097 0.35 +0.2 3,238,579 + DVU3097 0.37 +0.2 3,238,581 + DVU3097 0.37 -0.8 3,238,589 - DVU3097 0.37 -0.8 3,238,589 - DVU3097 0.37 +0.6 3,238,651 + DVU3097 0.42 +1.1 3,238,678 - DVU3097 0.44 +1.1 3,238,678 - DVU3097 0.44 +0.0 3,238,719 - DVU3097 0.47 +1.2 3,238,792 - DVU3097 0.53 +0.2 3,238,802 - DVU3097 0.53 +0.3 3,238,826 + DVU3097 0.55 +1.5 3,238,840 - DVU3097 0.56 -0.2 3,238,907 + DVU3097 0.61 +1.1 3,238,907 + DVU3097 0.61 +0.9 3,238,910 - DVU3097 0.62 +0.9 3,238,915 - DVU3097 0.62 +1.1 3,238,915 - DVU3097 0.62 +0.9 3,238,929 + DVU3097 0.63 +2.8 3,238,929 + DVU3097 0.63 +1.4 3,238,978 + DVU3097 0.67 +1.4 3,239,047 - DVU3097 0.72 +0.2 3,239,056 - DVU3097 0.73 +1.0 3,239,071 - DVU3097 0.74 +0.1 3,239,075 + DVU3097 0.74 -0.4 3,239,198 + DVU3097 0.83 -0.1 3,239,206 - DVU3097 0.84 +0.9 3,239,242 + DVU3097 0.87 -0.5 3,239,244 - DVU3097 0.87 +0.7 3,239,255 - DVU3097 0.88 +2.2 3,239,392 - +1.2 3,239,547 - +0.7 3,239,605 - DVU3098 0.26 -0.2 3,239,672 + DVU3098 0.59 -0.1 3,239,698 + DVU3098 0.72 +0.5 3,239,706 - DVU3098 0.75 +1.2 3,239,718 + DVU3098 0.81 -0.1 3,239,783 + -0.2 3,240,431 - +0.6 3,240,464 + -0.1 3,240,497 + -0.7
Or see this region's nucleotide sequence