Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3098

Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3097 and DVU3098 are separated by 136 nucleotidesDVU3098 and tolQ-2 are separated by 43 nucleotidestolQ-2 and tolR are separated by 9 nucleotides DVU3097: DVU3097 - outer membrane efflux protein (TIGR), at 3,238,096 to 3,239,415 DVU3097 DVU3098: DVU3098 - hypothetical protein (TIGR), at 3,239,552 to 3,239,755 DVU3098 DVU3099: tolQ-2 - tolQ protein (TIGR), at 3,239,799 to 3,240,491 tolQ-2 DVU3100: tolR - biopolymer transport protein, ExbD/TolR family (TIGR), at 3,240,501 to 3,240,920 tolR Position (kb) 3239 3240Strain fitness (log2 ratio) -1 0 1 2 3at 3238.554 kb on + strand, within DVU3097at 3238.564 kb on + strand, within DVU3097at 3238.579 kb on + strand, within DVU3097at 3238.581 kb on + strand, within DVU3097at 3238.589 kb on - strand, within DVU3097at 3238.589 kb on - strand, within DVU3097at 3238.651 kb on + strand, within DVU3097at 3238.678 kb on - strand, within DVU3097at 3238.678 kb on - strand, within DVU3097at 3238.719 kb on - strand, within DVU3097at 3238.792 kb on - strand, within DVU3097at 3238.802 kb on - strand, within DVU3097at 3238.826 kb on + strand, within DVU3097at 3238.840 kb on - strand, within DVU3097at 3238.907 kb on + strand, within DVU3097at 3238.907 kb on + strand, within DVU3097at 3238.910 kb on - strand, within DVU3097at 3238.915 kb on - strand, within DVU3097at 3238.915 kb on - strand, within DVU3097at 3238.929 kb on + strand, within DVU3097at 3238.929 kb on + strand, within DVU3097at 3238.978 kb on + strand, within DVU3097at 3239.047 kb on - strand, within DVU3097at 3239.056 kb on - strand, within DVU3097at 3239.071 kb on - strand, within DVU3097at 3239.075 kb on + strand, within DVU3097at 3239.198 kb on + strand, within DVU3097at 3239.206 kb on - strand, within DVU3097at 3239.242 kb on + strand, within DVU3097at 3239.244 kb on - strand, within DVU3097at 3239.255 kb on - strand, within DVU3097at 3239.392 kb on - strandat 3239.547 kb on - strandat 3239.605 kb on - strand, within DVU3098at 3239.672 kb on + strand, within DVU3098at 3239.698 kb on + strand, within DVU3098at 3239.706 kb on - strand, within DVU3098at 3239.718 kb on + strand, within DVU3098at 3239.783 kb on + strandat 3240.431 kb on - strandat 3240.464 kb on + strandat 3240.497 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate
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3,238,554 + DVU3097 0.35 -0.1
3,238,564 + DVU3097 0.35 +0.2
3,238,579 + DVU3097 0.37 +0.2
3,238,581 + DVU3097 0.37 -0.8
3,238,589 - DVU3097 0.37 -0.8
3,238,589 - DVU3097 0.37 +0.6
3,238,651 + DVU3097 0.42 +1.1
3,238,678 - DVU3097 0.44 +1.1
3,238,678 - DVU3097 0.44 +0.0
3,238,719 - DVU3097 0.47 +1.2
3,238,792 - DVU3097 0.53 +0.2
3,238,802 - DVU3097 0.53 +0.3
3,238,826 + DVU3097 0.55 +1.5
3,238,840 - DVU3097 0.56 -0.2
3,238,907 + DVU3097 0.61 +1.1
3,238,907 + DVU3097 0.61 +0.9
3,238,910 - DVU3097 0.62 +0.9
3,238,915 - DVU3097 0.62 +1.1
3,238,915 - DVU3097 0.62 +0.9
3,238,929 + DVU3097 0.63 +2.8
3,238,929 + DVU3097 0.63 +1.4
3,238,978 + DVU3097 0.67 +1.4
3,239,047 - DVU3097 0.72 +0.2
3,239,056 - DVU3097 0.73 +1.0
3,239,071 - DVU3097 0.74 +0.1
3,239,075 + DVU3097 0.74 -0.4
3,239,198 + DVU3097 0.83 -0.1
3,239,206 - DVU3097 0.84 +0.9
3,239,242 + DVU3097 0.87 -0.5
3,239,244 - DVU3097 0.87 +0.7
3,239,255 - DVU3097 0.88 +2.2
3,239,392 - +1.2
3,239,547 - +0.7
3,239,605 - DVU3098 0.26 -0.2
3,239,672 + DVU3098 0.59 -0.1
3,239,698 + DVU3098 0.72 +0.5
3,239,706 - DVU3098 0.75 +1.2
3,239,718 + DVU3098 0.81 -0.1
3,239,783 + -0.2
3,240,431 - +0.6
3,240,464 + -0.1
3,240,497 + -0.7

Or see this region's nucleotide sequence