Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2863

Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2860 and DVU2861 overlap by 17 nucleotidesDVU2861 and DVU2862 overlap by 4 nucleotidesDVU2862 and DVU2863 overlap by 4 nucleotidesDVU2863 and DVU2864 are separated by 2 nucleotidesDVU2864 and DVU2865 are separated by 16 nucleotidesDVU2865 and DVU2866 are separated by 17 nucleotides DVU2860: DVU2860 - conserved hypothetical protein (TIGR), at 2,960,258 to 2,960,449 DVU2860 DVU2861: DVU2861 - hypothetical protein (TIGR), at 2,960,433 to 2,960,990 DVU2861 DVU2862: DVU2862 - hypothetical protein (TIGR), at 2,960,987 to 2,961,313 DVU2862 DVU2863: DVU2863 - hypothetical protein (TIGR), at 2,961,310 to 2,961,903 DVU2863 DVU2864: DVU2864 - hypothetical protein (TIGR), at 2,961,906 to 2,962,049 DVU2864 DVU2865: DVU2865 - lipoprotein, putative (TIGR), at 2,962,066 to 2,962,476 DVU2865 DVU2866: DVU2866 - conserved hypothetical protein (TIGR), at 2,962,494 to 2,963,042 DVU2866 Position (kb) 2961 2962Strain fitness (log2 ratio) -1 0 1at 2960.703 kb on + strand, within DVU2861at 2960.925 kb on - strand, within DVU2861at 2960.925 kb on - strand, within DVU2861at 2961.473 kb on - strand, within DVU2863at 2961.473 kb on - strand, within DVU2863at 2961.978 kb on + strand, within DVU2864at 2961.978 kb on + strand, within DVU2864at 2961.993 kb on + strand, within DVU2864at 2962.226 kb on + strand, within DVU2865at 2962.499 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate
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2,960,703 + DVU2861 0.48 -0.8
2,960,925 - DVU2861 0.88 +0.0
2,960,925 - DVU2861 0.88 -1.0
2,961,473 - DVU2863 0.27 +0.5
2,961,473 - DVU2863 0.27 -0.5
2,961,978 + DVU2864 0.50 +0.6
2,961,978 + DVU2864 0.50 -0.7
2,961,993 + DVU2864 0.60 -0.0
2,962,226 + DVU2865 0.39 -0.1
2,962,499 - -0.3

Or see this region's nucleotide sequence