Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2766

Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2764 and DVU2765 overlap by 1 nucleotidesDVU2765 and DVU2766 are separated by 87 nucleotidesDVU2766 and DVU2767 overlap by 4 nucleotidesDVU2767 and DVU2768 are separated by 91 nucleotides DVU2764: DVU2764 - nitroreductase family protein (TIGR), at 2,873,200 to 2,873,718 DVU2764 DVU2765: DVU2765 - metallo-beta-lactamase family protein (TIGR), at 2,873,718 to 2,874,344 DVU2765 DVU2766: DVU2766 - hypothetical protein (TIGR), at 2,874,432 to 2,874,599 DVU2766 DVU2767: DVU2767 - iron-sulfur flavoprotein, putative (TIGR), at 2,874,596 to 2,875,210 DVU2767 DVU2768: DVU2768 - comF family protein (TIGR), at 2,875,302 to 2,876,198 DVU2768 Position (kb) 2874 2875Strain fitness (log2 ratio) -1 0 1 2at 2873.582 kb on + strand, within DVU2764at 2873.695 kb on - strandat 2873.848 kb on + strand, within DVU2765at 2873.855 kb on - strand, within DVU2765at 2873.862 kb on - strand, within DVU2765at 2873.884 kb on + strand, within DVU2765at 2873.885 kb on - strand, within DVU2765at 2873.887 kb on - strand, within DVU2765at 2873.895 kb on + strand, within DVU2765at 2873.905 kb on + strand, within DVU2765at 2873.932 kb on + strand, within DVU2765at 2873.989 kb on - strand, within DVU2765at 2873.996 kb on - strand, within DVU2765at 2874.045 kb on + strand, within DVU2765at 2874.078 kb on + strand, within DVU2765at 2874.090 kb on + strand, within DVU2765at 2874.091 kb on - strand, within DVU2765at 2874.091 kb on - strand, within DVU2765at 2874.102 kb on - strand, within DVU2765at 2874.228 kb on - strand, within DVU2765at 2874.236 kb on + strand, within DVU2765at 2874.236 kb on + strand, within DVU2765at 2874.269 kb on + strand, within DVU2765at 2874.376 kb on + strandat 2874.403 kb on - strandat 2874.420 kb on + strandat 2874.422 kb on - strandat 2874.457 kb on + strand, within DVU2766at 2874.465 kb on - strand, within DVU2766at 2874.465 kb on - strand, within DVU2766at 2874.478 kb on - strand, within DVU2766at 2874.561 kb on + strand, within DVU2766at 2874.592 kb on + strandat 2875.200 kb on - strandat 2875.232 kb on + strandat 2875.268 kb on - strandat 2875.276 kb on + strandat 2875.337 kb on - strandat 2875.349 kb on - strandat 2875.539 kb on + strand, within DVU2768at 2875.556 kb on + strand, within DVU2768at 2875.556 kb on + strand, within DVU2768at 2875.585 kb on + strand, within DVU2768

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate
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2,873,582 + DVU2764 0.74 -0.8
2,873,695 - -0.6
2,873,848 + DVU2765 0.21 -0.4
2,873,855 - DVU2765 0.22 -0.1
2,873,862 - DVU2765 0.23 +0.3
2,873,884 + DVU2765 0.26 -0.2
2,873,885 - DVU2765 0.27 -0.3
2,873,887 - DVU2765 0.27 -0.1
2,873,895 + DVU2765 0.28 -0.1
2,873,905 + DVU2765 0.30 +0.5
2,873,932 + DVU2765 0.34 -0.1
2,873,989 - DVU2765 0.43 -0.2
2,873,996 - DVU2765 0.44 -0.1
2,874,045 + DVU2765 0.52 -0.1
2,874,078 + DVU2765 0.57 -0.4
2,874,090 + DVU2765 0.59 -0.7
2,874,091 - DVU2765 0.59 +0.3
2,874,091 - DVU2765 0.59 +0.3
2,874,102 - DVU2765 0.61 -0.0
2,874,228 - DVU2765 0.81 -0.5
2,874,236 + DVU2765 0.83 -0.1
2,874,236 + DVU2765 0.83 +1.8
2,874,269 + DVU2765 0.88 -0.3
2,874,376 + +0.5
2,874,403 - +0.0
2,874,420 + -1.0
2,874,422 - -0.4
2,874,457 + DVU2766 0.15 +1.2
2,874,465 - DVU2766 0.20 +0.4
2,874,465 - DVU2766 0.20 +0.2
2,874,478 - DVU2766 0.27 -0.5
2,874,561 + DVU2766 0.77 +1.8
2,874,592 + +0.0
2,875,200 - +0.3
2,875,232 + +0.1
2,875,268 - +0.7
2,875,276 + -0.6
2,875,337 - -0.4
2,875,349 - -0.0
2,875,539 + DVU2768 0.26 +0.4
2,875,556 + DVU2768 0.28 -0.0
2,875,556 + DVU2768 0.28 +1.2
2,875,585 + DVU2768 0.32 +0.1

Or see this region's nucleotide sequence