Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2764 and DVU2765 overlap by 1 nucleotides DVU2765 and DVU2766 are separated by 87 nucleotides DVU2766 and DVU2767 overlap by 4 nucleotides DVU2767 and DVU2768 are separated by 91 nucleotides
DVU2764: DVU2764 - nitroreductase family protein (TIGR), at 2,873,200 to 2,873,718
DVU2764
DVU2765: DVU2765 - metallo-beta-lactamase family protein (TIGR), at 2,873,718 to 2,874,344
DVU2765
DVU2766: DVU2766 - hypothetical protein (TIGR), at 2,874,432 to 2,874,599
DVU2766
DVU2767: DVU2767 - iron-sulfur flavoprotein, putative (TIGR), at 2,874,596 to 2,875,210
DVU2767
DVU2768: DVU2768 - comF family protein (TIGR), at 2,875,302 to 2,876,198
DVU2768
Position (kb)
2874
2875 Strain fitness (log2 ratio)
-1
0
1
2 at 2873.582 kb on + strand, within DVU2764 at 2873.695 kb on - strand at 2873.848 kb on + strand, within DVU2765 at 2873.855 kb on - strand, within DVU2765 at 2873.862 kb on - strand, within DVU2765 at 2873.884 kb on + strand, within DVU2765 at 2873.885 kb on - strand, within DVU2765 at 2873.887 kb on - strand, within DVU2765 at 2873.895 kb on + strand, within DVU2765 at 2873.905 kb on + strand, within DVU2765 at 2873.932 kb on + strand, within DVU2765 at 2873.989 kb on - strand, within DVU2765 at 2873.996 kb on - strand, within DVU2765 at 2874.045 kb on + strand, within DVU2765 at 2874.078 kb on + strand, within DVU2765 at 2874.090 kb on + strand, within DVU2765 at 2874.091 kb on - strand, within DVU2765 at 2874.091 kb on - strand, within DVU2765 at 2874.102 kb on - strand, within DVU2765 at 2874.228 kb on - strand, within DVU2765 at 2874.236 kb on + strand, within DVU2765 at 2874.236 kb on + strand, within DVU2765 at 2874.269 kb on + strand, within DVU2765 at 2874.376 kb on + strand at 2874.403 kb on - strand at 2874.420 kb on + strand at 2874.422 kb on - strand at 2874.457 kb on + strand, within DVU2766 at 2874.465 kb on - strand, within DVU2766 at 2874.465 kb on - strand, within DVU2766 at 2874.478 kb on - strand, within DVU2766 at 2874.561 kb on + strand, within DVU2766 at 2874.592 kb on + strand at 2875.200 kb on - strand at 2875.232 kb on + strand at 2875.268 kb on - strand at 2875.276 kb on + strand at 2875.337 kb on - strand at 2875.349 kb on - strand at 2875.539 kb on + strand, within DVU2768 at 2875.556 kb on + strand, within DVU2768 at 2875.556 kb on + strand, within DVU2768 at 2875.585 kb on + strand, within DVU2768
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate remove 2,873,582 + DVU2764 0.74 -0.8 2,873,695 - -0.6 2,873,848 + DVU2765 0.21 -0.4 2,873,855 - DVU2765 0.22 -0.1 2,873,862 - DVU2765 0.23 +0.3 2,873,884 + DVU2765 0.26 -0.2 2,873,885 - DVU2765 0.27 -0.3 2,873,887 - DVU2765 0.27 -0.1 2,873,895 + DVU2765 0.28 -0.1 2,873,905 + DVU2765 0.30 +0.5 2,873,932 + DVU2765 0.34 -0.1 2,873,989 - DVU2765 0.43 -0.2 2,873,996 - DVU2765 0.44 -0.1 2,874,045 + DVU2765 0.52 -0.1 2,874,078 + DVU2765 0.57 -0.4 2,874,090 + DVU2765 0.59 -0.7 2,874,091 - DVU2765 0.59 +0.3 2,874,091 - DVU2765 0.59 +0.3 2,874,102 - DVU2765 0.61 -0.0 2,874,228 - DVU2765 0.81 -0.5 2,874,236 + DVU2765 0.83 -0.1 2,874,236 + DVU2765 0.83 +1.8 2,874,269 + DVU2765 0.88 -0.3 2,874,376 + +0.5 2,874,403 - +0.0 2,874,420 + -1.0 2,874,422 - -0.4 2,874,457 + DVU2766 0.15 +1.2 2,874,465 - DVU2766 0.20 +0.4 2,874,465 - DVU2766 0.20 +0.2 2,874,478 - DVU2766 0.27 -0.5 2,874,561 + DVU2766 0.77 +1.8 2,874,592 + +0.0 2,875,200 - +0.3 2,875,232 + +0.1 2,875,268 - +0.7 2,875,276 + -0.6 2,875,337 - -0.4 2,875,349 - -0.0 2,875,539 + DVU2768 0.26 +0.4 2,875,556 + DVU2768 0.28 -0.0 2,875,556 + DVU2768 0.28 +1.2 2,875,585 + DVU2768 0.32 +0.1
Or see this region's nucleotide sequence