Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1460

Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1459 and DVU1460 are separated by 35 nucleotidesDVU1460 and hemA are separated by 17 nucleotides DVU1459: DVU1459 - conserved domain protein (TIGR), at 1,538,486 to 1,539,658 DVU1459 DVU1460: DVU1460 - hypothetical protein (TIGR), at 1,539,694 to 1,540,029 DVU1460 DVU1461: hemA - glutamyl-tRNA reductase (TIGR), at 1,540,047 to 1,541,369 hemA Position (kb) 1539 1540 1541Strain fitness (log2 ratio) -1 0 1at 1539.758 kb on - strand, within DVU1460at 1539.816 kb on - strand, within DVU1460at 1540.035 kb on - strandat 1540.035 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate
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1,539,758 - DVU1460 0.19 +0.0
1,539,816 - DVU1460 0.36 +0.8
1,540,035 - +0.1
1,540,035 - +0.8

Or see this region's nucleotide sequence