Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1132 and DVU1133 overlap by 37 nucleotides DVU1133 and hupB are separated by 81 nucleotides hupB and DVU1135 are separated by 13 nucleotides DVU1135 and DVU1136 are separated by 17 nucleotides DVU1136 and DVU1137 are separated by 1 nucleotides DVU1137 and DVU1138 are separated by 2 nucleotides
DVU1132: DVU1132 - conserved hypothetical protein (TIGR), at 1,232,031 to 1,232,540
DVU1132
DVU1133: DVU1133 - hypothetical protein (TIGR), at 1,232,504 to 1,232,962
DVU1133
DVU1134: hupB - DNA-binding protein HU, beta subunit (TIGR), at 1,233,044 to 1,233,331
hupB
DVU1135: DVU1135 - conserved domain protein (TIGR), at 1,233,345 to 1,233,584
DVU1135
DVU1136: DVU1136 - host-nuclease inhibitor protein Gam, putative (TIGR), at 1,233,602 to 1,234,114
DVU1136
DVU1137: DVU1137 - hypothetical protein (TIGR), at 1,234,116 to 1,234,304
DVU1137
DVU1138: DVU1138 - hypothetical protein (TIGR), at 1,234,307 to 1,234,939
DVU1138
Position (kb) 1233
1234 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1232.474 kb on + strand, within DVU1132 at 1232.479 kb on + strand, within DVU1132 at 1232.479 kb on + strand, within DVU1132 at 1232.479 kb on + strand, within DVU1132 at 1232.487 kb on - strand, within DVU1132 at 1232.554 kb on + strand, within DVU1133 at 1232.578 kb on + strand, within DVU1133 at 1232.689 kb on + strand, within DVU1133 at 1232.836 kb on + strand, within DVU1133 at 1232.890 kb on + strand, within DVU1133 at 1232.903 kb on + strand, within DVU1133 at 1233.054 kb on - strand at 1233.073 kb on - strand, within hupB at 1233.121 kb on - strand, within hupB at 1233.201 kb on + strand, within hupB at 1233.209 kb on - strand, within hupB at 1233.229 kb on + strand, within hupB at 1233.236 kb on - strand, within hupB at 1233.246 kb on - strand, within hupB at 1233.259 kb on - strand, within hupB at 1233.278 kb on - strand, within hupB at 1233.299 kb on - strand, within hupB at 1233.304 kb on - strand at 1233.304 kb on - strand at 1233.315 kb on + strand at 1233.483 kb on + strand, within DVU1135 at 1233.514 kb on + strand, within DVU1135 at 1233.538 kb on + strand, within DVU1135 at 1233.564 kb on + strand at 1233.783 kb on + strand, within DVU1136 at 1233.791 kb on - strand, within DVU1136 at 1233.845 kb on + strand, within DVU1136 at 1233.888 kb on + strand, within DVU1136 at 1233.888 kb on + strand, within DVU1136 at 1233.896 kb on - strand, within DVU1136 at 1233.928 kb on + strand, within DVU1136 at 1233.968 kb on + strand, within DVU1136 at 1233.974 kb on + strand, within DVU1136 at 1233.974 kb on + strand, within DVU1136 at 1234.059 kb on + strand, within DVU1136 at 1234.092 kb on + strand at 1234.109 kb on + strand at 1234.168 kb on - strand, within DVU1137 at 1234.181 kb on - strand, within DVU1137 at 1234.282 kb on + strand, within DVU1137 at 1234.282 kb on + strand, within DVU1137 at 1234.313 kb on - strand at 1234.313 kb on - strand at 1234.337 kb on - strand at 1234.352 kb on - strand at 1234.479 kb on - strand, within DVU1138 at 1234.579 kb on - strand, within DVU1138
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05% without Molybdate/Tungstate remove 1,232,474 + DVU1132 0.87 -0.1 1,232,479 + DVU1132 0.88 -0.4 1,232,479 + DVU1132 0.88 +0.3 1,232,479 + DVU1132 0.88 -0.7 1,232,487 - DVU1132 0.89 -0.3 1,232,554 + DVU1133 0.11 -0.9 1,232,578 + DVU1133 0.16 +0.8 1,232,689 + DVU1133 0.40 -1.3 1,232,836 + DVU1133 0.72 -0.3 1,232,890 + DVU1133 0.84 -2.4 1,232,903 + DVU1133 0.87 -0.5 1,233,054 - -0.2 1,233,073 - hupB DVU1134 0.10 +1.8 1,233,121 - hupB DVU1134 0.27 -0.2 1,233,201 + hupB DVU1134 0.55 -0.3 1,233,209 - hupB DVU1134 0.57 +1.5 1,233,229 + hupB DVU1134 0.64 +0.1 1,233,236 - hupB DVU1134 0.67 -0.1 1,233,246 - hupB DVU1134 0.70 -0.2 1,233,259 - hupB DVU1134 0.75 -0.1 1,233,278 - hupB DVU1134 0.81 -0.7 1,233,299 - hupB DVU1134 0.89 -0.3 1,233,304 - -0.1 1,233,304 - -0.3 1,233,315 + -0.8 1,233,483 + DVU1135 0.57 -0.5 1,233,514 + DVU1135 0.70 +0.5 1,233,538 + DVU1135 0.80 +1.1 1,233,564 + -0.3 1,233,783 + DVU1136 0.35 -0.3 1,233,791 - DVU1136 0.37 -1.4 1,233,845 + DVU1136 0.47 -0.0 1,233,888 + DVU1136 0.56 +0.3 1,233,888 + DVU1136 0.56 -0.3 1,233,896 - DVU1136 0.57 -0.2 1,233,928 + DVU1136 0.64 +1.2 1,233,968 + DVU1136 0.71 -0.1 1,233,974 + DVU1136 0.73 -0.1 1,233,974 + DVU1136 0.73 +0.4 1,234,059 + DVU1136 0.89 +0.5 1,234,092 + +0.1 1,234,109 + -0.1 1,234,168 - DVU1137 0.28 -0.1 1,234,181 - DVU1137 0.34 -0.8 1,234,282 + DVU1137 0.88 +0.1 1,234,282 + DVU1137 0.88 -0.2 1,234,313 - -0.1 1,234,313 - -0.5 1,234,337 - +0.0 1,234,352 - -0.1 1,234,479 - DVU1138 0.27 -0.1 1,234,579 - DVU1138 0.43 -0.7
Or see this region's nucleotide sequence