Experiment: Formate with EDTA 3.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08385 and MMP_RS08390 are separated by 114 nucleotides MMP_RS08390 and MMP_RS08395 are separated by 13 nucleotides MMP_RS08395 and MMP_RS08400 are separated by 113 nucleotides MMP_RS08400 and MMP_RS08405 are separated by 74 nucleotides
MMP_RS08385: MMP_RS08385 - ABC transporter substrate-binding protein, at 1,575,110 to 1,575,832
_RS08385
MMP_RS08390: MMP_RS08390 - DUF5400 domain-containing protein, at 1,575,947 to 1,576,276
_RS08390
MMP_RS08395: MMP_RS08395 - DsrE family protein, at 1,576,290 to 1,577,105
_RS08395
MMP_RS08400: MMP_RS08400 - MJ0307 family thioredoxin, at 1,577,219 to 1,577,461
_RS08400
MMP_RS08405: MMP_RS08405 - MFS transporter, at 1,577,536 to 1,578,906
_RS08405
Position (kb) 1576
1577
1578 Strain fitness (log2 ratio) -1
0
1 at 1575.326 kb on - strand, within MMP_RS08385 at 1575.405 kb on - strand, within MMP_RS08385 at 1575.556 kb on - strand, within MMP_RS08385 at 1575.556 kb on - strand, within MMP_RS08385 at 1575.604 kb on - strand, within MMP_RS08385 at 1575.622 kb on + strand, within MMP_RS08385 at 1575.752 kb on + strand, within MMP_RS08385 at 1575.919 kb on - strand at 1575.919 kb on - strand at 1575.931 kb on - strand at 1575.931 kb on - strand at 1575.949 kb on + strand at 1575.974 kb on - strand at 1575.974 kb on - strand at 1575.975 kb on + strand at 1575.978 kb on + strand at 1576.011 kb on - strand, within MMP_RS08390 at 1576.049 kb on + strand, within MMP_RS08390 at 1576.128 kb on + strand, within MMP_RS08390 at 1576.150 kb on - strand, within MMP_RS08390 at 1576.247 kb on - strand at 1576.247 kb on - strand at 1576.254 kb on + strand at 1576.414 kb on + strand, within MMP_RS08395 at 1576.635 kb on + strand, within MMP_RS08395 at 1576.638 kb on - strand, within MMP_RS08395 at 1576.639 kb on + strand, within MMP_RS08395 at 1576.738 kb on + strand, within MMP_RS08395 at 1576.899 kb on + strand, within MMP_RS08395 at 1577.091 kb on - strand at 1577.357 kb on - strand, within MMP_RS08400 at 1577.358 kb on + strand, within MMP_RS08400 at 1577.358 kb on + strand, within MMP_RS08400 at 1577.484 kb on - strand at 1577.485 kb on + strand at 1577.492 kb on - strand at 1577.503 kb on - strand at 1577.517 kb on - strand at 1577.517 kb on - strand at 1577.519 kb on - strand at 1577.520 kb on + strand at 1577.520 kb on + strand at 1577.843 kb on - strand, within MMP_RS08405 at 1577.883 kb on - strand, within MMP_RS08405 at 1577.957 kb on + strand, within MMP_RS08405 at 1577.957 kb on + strand, within MMP_RS08405 at 1577.968 kb on + strand, within MMP_RS08405 at 1577.973 kb on + strand, within MMP_RS08405 at 1578.021 kb on - strand, within MMP_RS08405 at 1578.022 kb on + strand, within MMP_RS08405 at 1578.042 kb on - strand, within MMP_RS08405 at 1578.058 kb on - strand, within MMP_RS08405 at 1578.059 kb on + strand, within MMP_RS08405
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with EDTA 3.9 mM remove 1,575,326 - MMP_RS08385 0.30 +0.1 1,575,405 - MMP_RS08385 0.41 -0.5 1,575,556 - MMP_RS08385 0.62 +0.5 1,575,556 - MMP_RS08385 0.62 +0.4 1,575,604 - MMP_RS08385 0.68 +0.0 1,575,622 + MMP_RS08385 0.71 +0.1 1,575,752 + MMP_RS08385 0.89 +0.1 1,575,919 - -0.1 1,575,919 - -0.0 1,575,931 - -0.2 1,575,931 - -0.4 1,575,949 + -0.2 1,575,974 - -0.7 1,575,974 - +0.2 1,575,975 + +0.8 1,575,978 + -0.6 1,576,011 - MMP_RS08390 0.19 -0.1 1,576,049 + MMP_RS08390 0.31 -0.5 1,576,128 + MMP_RS08390 0.55 +0.1 1,576,150 - MMP_RS08390 0.62 -0.5 1,576,247 - +0.5 1,576,247 - +0.5 1,576,254 + +0.0 1,576,414 + MMP_RS08395 0.15 -0.5 1,576,635 + MMP_RS08395 0.42 +0.3 1,576,638 - MMP_RS08395 0.43 -0.1 1,576,639 + MMP_RS08395 0.43 -0.9 1,576,738 + MMP_RS08395 0.55 -0.4 1,576,899 + MMP_RS08395 0.75 +0.3 1,577,091 - +0.8 1,577,357 - MMP_RS08400 0.57 +0.2 1,577,358 + MMP_RS08400 0.57 -0.2 1,577,358 + MMP_RS08400 0.57 +0.3 1,577,484 - +0.4 1,577,485 + -0.4 1,577,492 - +1.1 1,577,503 - -1.0 1,577,517 - +0.4 1,577,517 - +1.0 1,577,519 - -0.1 1,577,520 + +0.2 1,577,520 + -0.2 1,577,843 - MMP_RS08405 0.22 -0.5 1,577,883 - MMP_RS08405 0.25 +0.0 1,577,957 + MMP_RS08405 0.31 -0.6 1,577,957 + MMP_RS08405 0.31 -0.0 1,577,968 + MMP_RS08405 0.32 -0.6 1,577,973 + MMP_RS08405 0.32 +1.6 1,578,021 - MMP_RS08405 0.35 -0.0 1,578,022 + MMP_RS08405 0.35 -0.7 1,578,042 - MMP_RS08405 0.37 +0.0 1,578,058 - MMP_RS08405 0.38 +0.1 1,578,059 + MMP_RS08405 0.38 -0.9
Or see this region's nucleotide sequence