Experiment: Formate with EDTA 3.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07805 and MMP_RS07810 are separated by 166 nucleotides MMP_RS07810 and MMP_RS07815 are separated by 26 nucleotides MMP_RS07815 and MMP_RS07820 are separated by 9 nucleotides
MMP_RS07805: MMP_RS07805 - ABC transporter permease, at 1,478,743 to 1,479,510
_RS07805
MMP_RS07810: MMP_RS07810 - hydrogenase nickel incorporation protein HypB, at 1,479,677 to 1,480,351
_RS07810
MMP_RS07815: MMP_RS07815 - DUF2120 domain-containing protein, at 1,480,378 to 1,480,797
_RS07815
MMP_RS07820: MMP_RS07820 - UPF0104 family protein, at 1,480,807 to 1,481,829
_RS07820
Position (kb)
1480
1481 Strain fitness (log2 ratio)
-1
0
1 at 1479.443 kb on + strand at 1479.534 kb on + strand at 1479.601 kb on - strand at 1479.605 kb on + strand at 1479.621 kb on - strand at 1479.640 kb on - strand at 1479.640 kb on - strand at 1479.641 kb on + strand at 1479.641 kb on + strand at 1479.641 kb on + strand at 1479.651 kb on - strand at 1479.652 kb on + strand at 1479.652 kb on + strand at 1479.714 kb on - strand at 1479.715 kb on + strand at 1480.003 kb on + strand at 1480.182 kb on - strand at 1480.276 kb on + strand at 1480.316 kb on + strand at 1480.336 kb on + strand at 1480.353 kb on - strand at 1480.355 kb on - strand at 1480.358 kb on + strand at 1480.358 kb on + strand at 1480.699 kb on - strand, within MMP_RS07815 at 1480.780 kb on - strand at 1480.780 kb on - strand at 1480.780 kb on - strand at 1480.786 kb on - strand at 1480.797 kb on - strand at 1480.809 kb on + strand at 1480.823 kb on - strand at 1480.958 kb on - strand, within MMP_RS07820 at 1481.109 kb on - strand, within MMP_RS07820 at 1481.209 kb on + strand, within MMP_RS07820 at 1481.231 kb on + strand, within MMP_RS07820 at 1481.399 kb on + strand, within MMP_RS07820 at 1481.551 kb on - strand, within MMP_RS07820 at 1481.668 kb on - strand, within MMP_RS07820 at 1481.744 kb on + strand at 1481.758 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with EDTA 3.9 mM remove 1,479,443 + -1.0 1,479,534 + -0.1 1,479,601 - +0.3 1,479,605 + +0.2 1,479,621 - -0.3 1,479,640 - +0.1 1,479,640 - +0.5 1,479,641 + +0.4 1,479,641 + -0.2 1,479,641 + -0.8 1,479,651 - -0.1 1,479,652 + +0.1 1,479,652 + -0.3 1,479,714 - -1.3 1,479,715 + -0.9 1,480,003 + -1.1 1,480,182 - +0.4 1,480,276 + +0.0 1,480,316 + -0.2 1,480,336 + +1.6 1,480,353 - +0.4 1,480,355 - +0.3 1,480,358 + +0.0 1,480,358 + -0.5 1,480,699 - MMP_RS07815 0.76 -0.4 1,480,780 - +0.3 1,480,780 - +0.5 1,480,780 - +0.1 1,480,786 - +0.4 1,480,797 - +0.9 1,480,809 + -0.4 1,480,823 - -0.4 1,480,958 - MMP_RS07820 0.15 +0.9 1,481,109 - MMP_RS07820 0.30 +0.4 1,481,209 + MMP_RS07820 0.39 -0.5 1,481,231 + MMP_RS07820 0.41 +0.1 1,481,399 + MMP_RS07820 0.58 -0.1 1,481,551 - MMP_RS07820 0.73 +0.6 1,481,668 - MMP_RS07820 0.84 -0.7 1,481,744 + -0.4 1,481,758 + -0.6
Or see this region's nucleotide sequence