Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07815

Experiment: Formate with EDTA 3.9 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07805 and MMP_RS07810 are separated by 166 nucleotidesMMP_RS07810 and MMP_RS07815 are separated by 26 nucleotidesMMP_RS07815 and MMP_RS07820 are separated by 9 nucleotides MMP_RS07805: MMP_RS07805 - ABC transporter permease, at 1,478,743 to 1,479,510 _RS07805 MMP_RS07810: MMP_RS07810 - hydrogenase nickel incorporation protein HypB, at 1,479,677 to 1,480,351 _RS07810 MMP_RS07815: MMP_RS07815 - DUF2120 domain-containing protein, at 1,480,378 to 1,480,797 _RS07815 MMP_RS07820: MMP_RS07820 - UPF0104 family protein, at 1,480,807 to 1,481,829 _RS07820 Position (kb) 1480 1481Strain fitness (log2 ratio) -1 0 1at 1479.443 kb on + strandat 1479.534 kb on + strandat 1479.601 kb on - strandat 1479.605 kb on + strandat 1479.621 kb on - strandat 1479.640 kb on - strandat 1479.640 kb on - strandat 1479.641 kb on + strandat 1479.641 kb on + strandat 1479.641 kb on + strandat 1479.651 kb on - strandat 1479.652 kb on + strandat 1479.652 kb on + strandat 1479.714 kb on - strandat 1479.715 kb on + strandat 1480.003 kb on + strandat 1480.182 kb on - strandat 1480.276 kb on + strandat 1480.316 kb on + strandat 1480.336 kb on + strandat 1480.353 kb on - strandat 1480.355 kb on - strandat 1480.358 kb on + strandat 1480.358 kb on + strandat 1480.699 kb on - strand, within MMP_RS07815at 1480.780 kb on - strandat 1480.780 kb on - strandat 1480.780 kb on - strandat 1480.786 kb on - strandat 1480.797 kb on - strandat 1480.809 kb on + strandat 1480.823 kb on - strandat 1480.958 kb on - strand, within MMP_RS07820at 1481.109 kb on - strand, within MMP_RS07820at 1481.209 kb on + strand, within MMP_RS07820at 1481.231 kb on + strand, within MMP_RS07820at 1481.399 kb on + strand, within MMP_RS07820at 1481.551 kb on - strand, within MMP_RS07820at 1481.668 kb on - strand, within MMP_RS07820at 1481.744 kb on + strandat 1481.758 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with EDTA 3.9 mM
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1,479,443 + -1.0
1,479,534 + -0.1
1,479,601 - +0.3
1,479,605 + +0.2
1,479,621 - -0.3
1,479,640 - +0.1
1,479,640 - +0.5
1,479,641 + +0.4
1,479,641 + -0.2
1,479,641 + -0.8
1,479,651 - -0.1
1,479,652 + +0.1
1,479,652 + -0.3
1,479,714 - -1.3
1,479,715 + -0.9
1,480,003 + -1.1
1,480,182 - +0.4
1,480,276 + +0.0
1,480,316 + -0.2
1,480,336 + +1.6
1,480,353 - +0.4
1,480,355 - +0.3
1,480,358 + +0.0
1,480,358 + -0.5
1,480,699 - MMP_RS07815 0.76 -0.4
1,480,780 - +0.3
1,480,780 - +0.5
1,480,780 - +0.1
1,480,786 - +0.4
1,480,797 - +0.9
1,480,809 + -0.4
1,480,823 - -0.4
1,480,958 - MMP_RS07820 0.15 +0.9
1,481,109 - MMP_RS07820 0.30 +0.4
1,481,209 + MMP_RS07820 0.39 -0.5
1,481,231 + MMP_RS07820 0.41 +0.1
1,481,399 + MMP_RS07820 0.58 -0.1
1,481,551 - MMP_RS07820 0.73 +0.6
1,481,668 - MMP_RS07820 0.84 -0.7
1,481,744 + -0.4
1,481,758 + -0.6

Or see this region's nucleotide sequence