Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05865

Experiment: Formate with EDTA 3.9 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05860 and MMP_RS05865 are separated by 185 nucleotidesMMP_RS05865 and MMP_RS05870 are separated by 201 nucleotidesMMP_RS05870 and MMP_RS05875 are separated by 209 nucleotides MMP_RS05860: MMP_RS05860 - FprA family A-type flavoprotein, at 1,125,405 to 1,126,625 _RS05860 MMP_RS05865: MMP_RS05865 - hypothetical protein, at 1,126,811 to 1,127,230 _RS05865 MMP_RS05870: MMP_RS05870 - Lrp/AsnC family transcriptional regulator, at 1,127,432 to 1,127,854 _RS05870 MMP_RS05875: MMP_RS05875 - hydroxyethylthiazole kinase, at 1,128,064 to 1,128,864 _RS05875 Position (kb) 1126 1127 1128Strain fitness (log2 ratio) -1 0 1at 1126.555 kb on + strandat 1126.676 kb on - strandat 1126.687 kb on - strandat 1126.692 kb on + strandat 1126.697 kb on + strandat 1126.698 kb on - strandat 1126.723 kb on + strandat 1126.787 kb on + strandat 1126.787 kb on + strandat 1126.798 kb on - strandat 1126.798 kb on - strandat 1126.799 kb on + strandat 1126.799 kb on + strandat 1126.799 kb on + strandat 1126.819 kb on - strandat 1127.032 kb on + strand, within MMP_RS05865at 1127.042 kb on + strand, within MMP_RS05865at 1127.212 kb on + strandat 1127.215 kb on - strandat 1127.220 kb on + strandat 1127.258 kb on - strandat 1127.269 kb on + strandat 1127.316 kb on + strandat 1127.342 kb on - strandat 1127.438 kb on - strandat 1127.875 kb on - strandat 1127.875 kb on - strandat 1127.876 kb on + strandat 1127.876 kb on + strandat 1127.929 kb on - strandat 1127.930 kb on + strandat 1127.932 kb on + strandat 1127.933 kb on - strandat 1127.934 kb on + strandat 1127.952 kb on - strandat 1128.015 kb on - strandat 1128.015 kb on - strandat 1128.015 kb on - strandat 1128.015 kb on - strandat 1128.018 kb on + strandat 1128.018 kb on + strandat 1128.030 kb on + strandat 1128.040 kb on + strandat 1128.074 kb on - strandat 1128.075 kb on + strandat 1128.134 kb on + strandat 1128.140 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with EDTA 3.9 mM
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1,126,555 + +0.4
1,126,676 - -0.4
1,126,687 - +0.2
1,126,692 + -0.4
1,126,697 + -0.1
1,126,698 - -0.1
1,126,723 + -0.4
1,126,787 + -0.0
1,126,787 + -1.2
1,126,798 - +0.1
1,126,798 - +0.1
1,126,799 + +0.9
1,126,799 + +0.3
1,126,799 + +0.3
1,126,819 - -0.4
1,127,032 + MMP_RS05865 0.53 -0.2
1,127,042 + MMP_RS05865 0.55 -0.3
1,127,212 + -0.3
1,127,215 - -0.4
1,127,220 + -0.4
1,127,258 - -0.7
1,127,269 + -0.2
1,127,316 + +1.6
1,127,342 - -0.3
1,127,438 - +0.4
1,127,875 - -0.2
1,127,875 - -0.4
1,127,876 + +0.3
1,127,876 + -1.0
1,127,929 - +0.8
1,127,930 + +0.3
1,127,932 + -0.5
1,127,933 - -0.4
1,127,934 + -0.2
1,127,952 - -0.5
1,128,015 - -1.0
1,128,015 - -0.0
1,128,015 - +0.6
1,128,015 - +0.2
1,128,018 + +0.2
1,128,018 + -0.1
1,128,030 + -0.1
1,128,040 + -0.5
1,128,074 - -1.4
1,128,075 + -0.9
1,128,134 + -0.3
1,128,140 - -1.7

Or see this region's nucleotide sequence