Experiment: Formate with EDTA 3.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02625 and MMP_RS02630 are separated by 250 nucleotides MMP_RS02630 and MMP_RS02635 are separated by 35 nucleotides MMP_RS02635 and MMP_RS02640 are separated by 255 nucleotides
MMP_RS02625: MMP_RS02625 - ribonuclease H-like domain-containing protein, at 498,297 to 499,391
_RS02625
MMP_RS02630: MMP_RS02630 - rubredoxin, at 499,642 to 501,126
_RS02630
MMP_RS02635: MMP_RS02635 - class I SAM-dependent methyltransferase, at 501,162 to 501,839
_RS02635
MMP_RS02640: MMP_RS02640 - DUF6198 family protein, at 502,095 to 502,658
_RS02640
Position (kb) 499
500
501
502 Strain fitness (log2 ratio) -1
0
1
2 at 498.810 kb on - strand, within MMP_RS02625 at 498.822 kb on - strand, within MMP_RS02625 at 498.884 kb on - strand, within MMP_RS02625 at 499.068 kb on - strand, within MMP_RS02625 at 499.124 kb on + strand, within MMP_RS02625 at 499.165 kb on - strand, within MMP_RS02625 at 499.173 kb on - strand, within MMP_RS02625 at 499.371 kb on - strand at 499.412 kb on - strand at 499.413 kb on + strand at 499.444 kb on - strand at 499.475 kb on + strand at 499.513 kb on + strand at 499.561 kb on - strand at 499.562 kb on + strand at 499.563 kb on - strand at 499.563 kb on - strand at 499.564 kb on + strand at 499.567 kb on - strand at 499.574 kb on - strand at 499.575 kb on + strand at 499.578 kb on + strand at 499.589 kb on + strand at 500.097 kb on - strand, within MMP_RS02630 at 500.289 kb on - strand, within MMP_RS02630 at 500.289 kb on - strand, within MMP_RS02630 at 500.294 kb on + strand, within MMP_RS02630 at 500.300 kb on - strand, within MMP_RS02630 at 500.305 kb on - strand, within MMP_RS02630 at 500.305 kb on - strand, within MMP_RS02630 at 500.306 kb on + strand, within MMP_RS02630 at 500.310 kb on + strand, within MMP_RS02630 at 500.474 kb on - strand, within MMP_RS02630 at 500.502 kb on - strand, within MMP_RS02630 at 500.528 kb on - strand, within MMP_RS02630 at 500.618 kb on + strand, within MMP_RS02630 at 500.637 kb on - strand, within MMP_RS02630 at 500.763 kb on - strand, within MMP_RS02630 at 500.766 kb on + strand, within MMP_RS02630 at 500.776 kb on + strand, within MMP_RS02630 at 501.272 kb on + strand, within MMP_RS02635 at 501.272 kb on + strand, within MMP_RS02635 at 501.275 kb on - strand, within MMP_RS02635 at 501.504 kb on + strand, within MMP_RS02635 at 501.543 kb on - strand, within MMP_RS02635 at 501.543 kb on - strand, within MMP_RS02635 at 501.544 kb on + strand, within MMP_RS02635 at 501.546 kb on + strand, within MMP_RS02635 at 501.546 kb on + strand, within MMP_RS02635 at 501.600 kb on + strand, within MMP_RS02635 at 501.626 kb on - strand, within MMP_RS02635 at 501.626 kb on - strand, within MMP_RS02635 at 501.630 kb on + strand, within MMP_RS02635 at 501.643 kb on + strand, within MMP_RS02635 at 501.702 kb on - strand, within MMP_RS02635 at 501.785 kb on - strand at 501.787 kb on - strand at 501.792 kb on + strand at 501.792 kb on + strand at 501.793 kb on - strand at 501.834 kb on + strand at 501.862 kb on - strand at 501.874 kb on - strand at 501.875 kb on + strand at 501.876 kb on - strand at 501.876 kb on - strand at 501.908 kb on + strand at 501.988 kb on - strand at 501.989 kb on + strand at 501.991 kb on + strand at 502.011 kb on - strand at 502.016 kb on - strand at 502.035 kb on - strand at 502.035 kb on - strand at 502.036 kb on + strand at 502.036 kb on + strand at 502.036 kb on + strand at 502.036 kb on + strand at 502.039 kb on - strand at 502.039 kb on - strand at 502.039 kb on - strand at 502.055 kb on + strand at 502.114 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with EDTA 3.9 mM remove 498,810 - MMP_RS02625 0.47 -0.3 498,822 - MMP_RS02625 0.48 -0.5 498,884 - MMP_RS02625 0.54 -0.1 499,068 - MMP_RS02625 0.70 +0.1 499,124 + MMP_RS02625 0.76 -0.2 499,165 - MMP_RS02625 0.79 -0.1 499,173 - MMP_RS02625 0.80 -0.4 499,371 - +0.3 499,412 - -0.3 499,413 + +1.5 499,444 - -0.0 499,475 + -0.4 499,513 + +0.1 499,561 - +0.2 499,562 + +0.2 499,563 - +0.1 499,563 - +2.3 499,564 + -0.3 499,567 - -0.9 499,574 - +0.5 499,575 + +0.1 499,578 + -0.3 499,589 + +0.3 500,097 - MMP_RS02630 0.31 +0.1 500,289 - MMP_RS02630 0.44 -0.2 500,289 - MMP_RS02630 0.44 -1.0 500,294 + MMP_RS02630 0.44 +0.6 500,300 - MMP_RS02630 0.44 -0.8 500,305 - MMP_RS02630 0.45 -0.1 500,305 - MMP_RS02630 0.45 -0.4 500,306 + MMP_RS02630 0.45 -0.4 500,310 + MMP_RS02630 0.45 -0.4 500,474 - MMP_RS02630 0.56 -0.1 500,502 - MMP_RS02630 0.58 +0.4 500,528 - MMP_RS02630 0.60 -0.6 500,618 + MMP_RS02630 0.66 -0.4 500,637 - MMP_RS02630 0.67 -0.3 500,763 - MMP_RS02630 0.75 +0.7 500,766 + MMP_RS02630 0.76 -0.4 500,776 + MMP_RS02630 0.76 -0.2 501,272 + MMP_RS02635 0.16 -0.3 501,272 + MMP_RS02635 0.16 +0.2 501,275 - MMP_RS02635 0.17 -0.1 501,504 + MMP_RS02635 0.50 +0.1 501,543 - MMP_RS02635 0.56 -0.2 501,543 - MMP_RS02635 0.56 -0.1 501,544 + MMP_RS02635 0.56 +0.4 501,546 + MMP_RS02635 0.57 -0.0 501,546 + MMP_RS02635 0.57 +0.7 501,600 + MMP_RS02635 0.65 -0.1 501,626 - MMP_RS02635 0.68 +0.5 501,626 - MMP_RS02635 0.68 +0.4 501,630 + MMP_RS02635 0.69 +0.5 501,643 + MMP_RS02635 0.71 -0.4 501,702 - MMP_RS02635 0.80 -0.6 501,785 - -0.7 501,787 - -0.3 501,792 + -0.1 501,792 + -0.0 501,793 - +0.3 501,834 + +0.3 501,862 - +1.1 501,874 - -0.2 501,875 + +0.0 501,876 - +0.4 501,876 - +0.1 501,908 + -0.0 501,988 - -0.9 501,989 + +0.1 501,991 + +0.9 502,011 - +0.4 502,016 - -0.4 502,035 - -0.3 502,035 - -0.2 502,036 + -0.1 502,036 + -0.2 502,036 + -0.4 502,036 + -0.2 502,039 - +0.4 502,039 - -0.2 502,039 - -0.7 502,055 + -0.2 502,114 - +0.3
Or see this region's nucleotide sequence