Experiment: Formate with EDTA 3.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00890 and MMP_RS00895 are separated by 0 nucleotides MMP_RS00895 and MMP_RS00900 are separated by 16 nucleotides MMP_RS00900 and MMP_RS00905 are separated by 71 nucleotides MMP_RS00905 and MMP_RS00910 are separated by 151 nucleotides MMP_RS00910 and MMP_RS00915 are separated by 18 nucleotides
MMP_RS00890: MMP_RS00890 - DNA-binding protein, at 167,941 to 168,300
_RS00890
MMP_RS00895: MMP_RS00895 - hypothetical protein, at 168,301 to 168,900
_RS00895
MMP_RS00900: MMP_RS00900 - 50S ribosomal protein L39e, at 168,917 to 169,072
_RS00900
MMP_RS00905: MMP_RS00905 - phenylacetate--CoA ligase, at 169,144 to 170,445
_RS00905
MMP_RS00910: MMP_RS00910 - 2-phosphosulfolactate phosphatase, at 170,597 to 171,343
_RS00910
MMP_RS00915: MMP_RS00915 - DUF116 domain-containing protein, at 171,362 to 172,006
_RS00915
Position (kb) 169
170
171 Strain fitness (log2 ratio) -2
-1
0
1 at 168.288 kb on + strand at 168.527 kb on - strand, within MMP_RS00895 at 168.740 kb on - strand, within MMP_RS00895 at 168.740 kb on - strand, within MMP_RS00895 at 168.741 kb on + strand, within MMP_RS00895 at 168.752 kb on + strand, within MMP_RS00895 at 168.758 kb on - strand, within MMP_RS00895 at 168.988 kb on - strand, within MMP_RS00900 at 169.021 kb on - strand, within MMP_RS00900 at 169.560 kb on - strand, within MMP_RS00905 at 169.651 kb on - strand, within MMP_RS00905 at 170.068 kb on + strand, within MMP_RS00905 at 170.263 kb on + strand, within MMP_RS00905 at 170.298 kb on - strand, within MMP_RS00905 at 170.357 kb on - strand at 170.536 kb on - strand at 170.579 kb on - strand at 170.582 kb on + strand at 170.593 kb on - strand at 170.599 kb on + strand at 170.693 kb on - strand, within MMP_RS00910 at 170.774 kb on - strand, within MMP_RS00910 at 170.826 kb on - strand, within MMP_RS00910 at 170.996 kb on + strand, within MMP_RS00910 at 171.029 kb on - strand, within MMP_RS00910 at 171.086 kb on - strand, within MMP_RS00910 at 171.165 kb on + strand, within MMP_RS00910 at 171.194 kb on - strand, within MMP_RS00910 at 171.196 kb on - strand, within MMP_RS00910 at 171.196 kb on - strand, within MMP_RS00910 at 171.196 kb on - strand, within MMP_RS00910 at 171.197 kb on + strand, within MMP_RS00910 at 171.197 kb on + strand, within MMP_RS00910 at 171.198 kb on - strand, within MMP_RS00910 at 171.198 kb on - strand, within MMP_RS00910 at 171.198 kb on - strand, within MMP_RS00910 at 171.199 kb on + strand, within MMP_RS00910 at 171.200 kb on - strand, within MMP_RS00910 at 171.201 kb on + strand, within MMP_RS00910 at 171.221 kb on - strand, within MMP_RS00910 at 171.227 kb on + strand, within MMP_RS00910 at 171.260 kb on - strand, within MMP_RS00910 at 171.280 kb on - strand at 171.417 kb on - strand at 171.417 kb on - strand at 171.444 kb on - strand, within MMP_RS00915 at 171.445 kb on + strand, within MMP_RS00915
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with EDTA 3.9 mM remove 168,288 + -0.9 168,527 - MMP_RS00895 0.38 +0.9 168,740 - MMP_RS00895 0.73 -1.3 168,740 - MMP_RS00895 0.73 -0.4 168,741 + MMP_RS00895 0.73 -0.3 168,752 + MMP_RS00895 0.75 -0.6 168,758 - MMP_RS00895 0.76 +0.8 168,988 - MMP_RS00900 0.46 +0.1 169,021 - MMP_RS00900 0.67 -0.2 169,560 - MMP_RS00905 0.32 -0.4 169,651 - MMP_RS00905 0.39 -0.1 170,068 + MMP_RS00905 0.71 -0.3 170,263 + MMP_RS00905 0.86 -0.2 170,298 - MMP_RS00905 0.89 -0.6 170,357 - +0.0 170,536 - +0.1 170,579 - -0.4 170,582 + +0.0 170,593 - +0.6 170,599 + -0.7 170,693 - MMP_RS00910 0.13 -0.0 170,774 - MMP_RS00910 0.24 +0.8 170,826 - MMP_RS00910 0.31 -0.6 170,996 + MMP_RS00910 0.53 -0.5 171,029 - MMP_RS00910 0.58 -0.4 171,086 - MMP_RS00910 0.65 +0.3 171,165 + MMP_RS00910 0.76 -0.4 171,194 - MMP_RS00910 0.80 -0.5 171,196 - MMP_RS00910 0.80 -1.2 171,196 - MMP_RS00910 0.80 -0.5 171,196 - MMP_RS00910 0.80 -0.6 171,197 + MMP_RS00910 0.80 -0.3 171,197 + MMP_RS00910 0.80 -0.6 171,198 - MMP_RS00910 0.80 -1.1 171,198 - MMP_RS00910 0.80 -1.2 171,198 - MMP_RS00910 0.80 +0.7 171,199 + MMP_RS00910 0.81 -1.1 171,200 - MMP_RS00910 0.81 -2.0 171,201 + MMP_RS00910 0.81 -0.5 171,221 - MMP_RS00910 0.84 -1.1 171,227 + MMP_RS00910 0.84 -0.6 171,260 - MMP_RS00910 0.89 -1.1 171,280 - -0.5 171,417 - -0.9 171,417 - -0.5 171,444 - MMP_RS00915 0.13 -0.2 171,445 + MMP_RS00915 0.13 -0.5
Or see this region's nucleotide sequence