Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00560

Experiment: Formate with EDTA 3.9 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00555 and MMP_RS00560 are separated by 19 nucleotidesMMP_RS00560 and MMP_RS00565 are separated by 14 nucleotidesMMP_RS00565 and MMP_RS00570 are separated by 88 nucleotides MMP_RS00555: MMP_RS00555 - MFS transporter, at 108,126 to 109,277 _RS00555 MMP_RS00560: MMP_RS00560 - cation:proton antiporter, at 109,297 to 110,475 _RS00560 MMP_RS00565: MMP_RS00565 - CBS domain-containing protein, at 110,490 to 110,975 _RS00565 MMP_RS00570: MMP_RS00570 - protein-L-isoaspartate O-methyltransferase, at 111,064 to 111,702 _RS00570 Position (kb) 109 110 111Strain fitness (log2 ratio) -1 0 1 2at 108.477 kb on - strand, within MMP_RS00555at 108.477 kb on - strand, within MMP_RS00555at 108.477 kb on - strand, within MMP_RS00555at 108.477 kb on - strand, within MMP_RS00555at 108.478 kb on + strand, within MMP_RS00555at 108.602 kb on - strand, within MMP_RS00555at 108.632 kb on + strand, within MMP_RS00555at 108.635 kb on - strand, within MMP_RS00555at 108.638 kb on + strand, within MMP_RS00555at 108.658 kb on + strand, within MMP_RS00555at 109.031 kb on - strand, within MMP_RS00555at 109.213 kb on + strandat 109.214 kb on - strandat 109.363 kb on + strandat 109.363 kb on + strandat 109.370 kb on + strandat 109.552 kb on - strand, within MMP_RS00560at 109.552 kb on - strand, within MMP_RS00560at 109.639 kb on - strand, within MMP_RS00560at 109.639 kb on - strand, within MMP_RS00560at 109.663 kb on + strand, within MMP_RS00560at 109.665 kb on - strand, within MMP_RS00560at 109.673 kb on + strand, within MMP_RS00560at 109.857 kb on - strand, within MMP_RS00560at 109.863 kb on - strand, within MMP_RS00560at 109.863 kb on - strand, within MMP_RS00560at 109.864 kb on + strand, within MMP_RS00560at 109.868 kb on + strand, within MMP_RS00560at 109.894 kb on + strand, within MMP_RS00560at 110.130 kb on + strand, within MMP_RS00560at 110.342 kb on + strand, within MMP_RS00560at 110.401 kb on + strandat 110.425 kb on + strandat 110.466 kb on - strandat 110.466 kb on - strandat 110.640 kb on + strand, within MMP_RS00565at 110.730 kb on - strand, within MMP_RS00565at 110.731 kb on + strand, within MMP_RS00565at 110.741 kb on - strand, within MMP_RS00565at 110.783 kb on + strand, within MMP_RS00565at 110.823 kb on - strand, within MMP_RS00565at 110.882 kb on - strand, within MMP_RS00565at 110.934 kb on + strandat 110.944 kb on - strandat 111.004 kb on - strandat 111.004 kb on - strandat 111.005 kb on + strandat 111.005 kb on + strandat 111.006 kb on - strandat 111.006 kb on - strandat 111.006 kb on - strandat 111.007 kb on + strandat 111.007 kb on + strandat 111.007 kb on + strandat 111.007 kb on + strandat 111.007 kb on + strandat 111.022 kb on - strandat 111.024 kb on - strandat 111.024 kb on - strandat 111.025 kb on + strandat 111.025 kb on + strandat 111.025 kb on + strandat 111.061 kb on - strandat 111.061 kb on - strandat 111.072 kb on + strandat 111.072 kb on + strandat 111.115 kb on - strandat 111.237 kb on - strand, within MMP_RS00570at 111.302 kb on - strand, within MMP_RS00570

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with EDTA 3.9 mM
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108,477 - MMP_RS00555 0.30 +0.4
108,477 - MMP_RS00555 0.30 -0.7
108,477 - MMP_RS00555 0.30 -0.6
108,477 - MMP_RS00555 0.30 -0.4
108,478 + MMP_RS00555 0.31 -1.1
108,602 - MMP_RS00555 0.41 -0.5
108,632 + MMP_RS00555 0.44 +0.3
108,635 - MMP_RS00555 0.44 +0.2
108,638 + MMP_RS00555 0.44 +0.2
108,658 + MMP_RS00555 0.46 +0.1
109,031 - MMP_RS00555 0.79 -0.5
109,213 + -0.2
109,214 - -0.6
109,363 + -0.4
109,363 + -0.6
109,370 + +0.6
109,552 - MMP_RS00560 0.22 -0.3
109,552 - MMP_RS00560 0.22 -0.7
109,639 - MMP_RS00560 0.29 -0.8
109,639 - MMP_RS00560 0.29 +0.0
109,663 + MMP_RS00560 0.31 +0.2
109,665 - MMP_RS00560 0.31 +0.1
109,673 + MMP_RS00560 0.32 +0.1
109,857 - MMP_RS00560 0.47 -0.2
109,863 - MMP_RS00560 0.48 -0.2
109,863 - MMP_RS00560 0.48 +0.3
109,864 + MMP_RS00560 0.48 -1.3
109,868 + MMP_RS00560 0.48 -0.5
109,894 + MMP_RS00560 0.51 +0.4
110,130 + MMP_RS00560 0.71 +0.1
110,342 + MMP_RS00560 0.89 +0.1
110,401 + -0.1
110,425 + +0.7
110,466 - -0.8
110,466 - -0.4
110,640 + MMP_RS00565 0.31 +0.1
110,730 - MMP_RS00565 0.49 +0.4
110,731 + MMP_RS00565 0.50 +0.1
110,741 - MMP_RS00565 0.52 +0.1
110,783 + MMP_RS00565 0.60 +2.6
110,823 - MMP_RS00565 0.69 -0.4
110,882 - MMP_RS00565 0.81 +0.8
110,934 + -0.1
110,944 - -0.1
111,004 - -0.6
111,004 - +0.7
111,005 + -0.3
111,005 + +0.1
111,006 - -0.9
111,006 - +0.3
111,006 - +1.1
111,007 + -0.8
111,007 + -0.4
111,007 + -0.4
111,007 + +0.0
111,007 + +0.4
111,022 - +0.2
111,024 - +1.3
111,024 - -0.1
111,025 + +1.1
111,025 + +0.8
111,025 + +0.4
111,061 - +0.8
111,061 - -0.4
111,072 + +0.0
111,072 + +0.1
111,115 - +0.3
111,237 - MMP_RS00570 0.27 -0.0
111,302 - MMP_RS00570 0.37 +0.5

Or see this region's nucleotide sequence