Experiment: Formate with EDTA 3.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00075 and MMP_RS00080 are separated by 26 nucleotides MMP_RS00080 and MMP_RS00085 are separated by 42 nucleotides MMP_RS00085 and MMP_RS00090 are separated by 69 nucleotides MMP_RS00090 and MMP_RS00095 are separated by 41 nucleotides
MMP_RS00075: MMP_RS00075 - hypothetical protein, at 19,370 to 20,479
_RS00075
MMP_RS00080: MMP_RS00080 - RecB-family nuclease, at 20,506 to 20,931
_RS00080
MMP_RS00085: MMP_RS00085 - DNA cytosine methyltransferase, at 20,974 to 22,041
_RS00085
MMP_RS00090: MMP_RS00090 - CoA-binding protein, at 22,111 to 22,560
_RS00090
MMP_RS00095: MMP_RS00095 - argininosuccinate lyase, at 22,602 to 24,047
_RS00095
Position (kb) 20
21
22
23 Strain fitness (log2 ratio) -1
0
1
2 at 20.020 kb on + strand at 20.084 kb on - strand at 20.135 kb on - strand at 20.705 kb on + strand, within MMP_RS00080 at 20.707 kb on - strand, within MMP_RS00080 at 20.731 kb on - strand, within MMP_RS00080 at 20.839 kb on + strand, within MMP_RS00080 at 20.842 kb on - strand, within MMP_RS00080 at 20.961 kb on + strand at 20.975 kb on - strand at 20.976 kb on + strand at 20.979 kb on - strand at 20.979 kb on - strand at 20.980 kb on + strand at 21.054 kb on + strand at 21.128 kb on + strand, within MMP_RS00085 at 21.209 kb on - strand, within MMP_RS00085 at 21.271 kb on + strand, within MMP_RS00085 at 21.518 kb on - strand, within MMP_RS00085 at 21.523 kb on - strand, within MMP_RS00085 at 21.567 kb on - strand, within MMP_RS00085 at 21.588 kb on + strand, within MMP_RS00085 at 21.692 kb on + strand, within MMP_RS00085 at 21.713 kb on - strand, within MMP_RS00085 at 21.721 kb on + strand, within MMP_RS00085 at 21.743 kb on - strand, within MMP_RS00085 at 21.763 kb on - strand, within MMP_RS00085 at 21.779 kb on + strand, within MMP_RS00085 at 21.826 kb on - strand, within MMP_RS00085 at 21.826 kb on - strand, within MMP_RS00085 at 21.827 kb on + strand, within MMP_RS00085 at 21.827 kb on + strand, within MMP_RS00085 at 22.073 kb on - strand at 22.073 kb on - strand at 22.074 kb on + strand at 22.075 kb on - strand at 22.075 kb on - strand at 22.075 kb on - strand at 22.076 kb on + strand at 22.076 kb on + strand at 22.076 kb on + strand at 22.076 kb on + strand at 22.076 kb on + strand at 22.089 kb on - strand at 22.109 kb on + strand at 22.109 kb on + strand at 22.128 kb on - strand at 22.128 kb on - strand at 22.128 kb on - strand at 22.158 kb on + strand, within MMP_RS00090 at 22.259 kb on + strand, within MMP_RS00090 at 22.279 kb on + strand, within MMP_RS00090 at 22.279 kb on + strand, within MMP_RS00090 at 22.334 kb on - strand, within MMP_RS00090 at 22.335 kb on + strand, within MMP_RS00090 at 22.335 kb on + strand, within MMP_RS00090 at 22.337 kb on + strand, within MMP_RS00090 at 22.540 kb on + strand at 22.576 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with EDTA 3.9 mM remove 20,020 + -0.4 20,084 - -0.4 20,135 - -0.7 20,705 + MMP_RS00080 0.47 -0.3 20,707 - MMP_RS00080 0.47 -0.2 20,731 - MMP_RS00080 0.53 +0.8 20,839 + MMP_RS00080 0.78 -0.3 20,842 - MMP_RS00080 0.79 -0.1 20,961 + +0.6 20,975 - -0.3 20,976 + +0.2 20,979 - +2.4 20,979 - -0.3 20,980 + -0.1 21,054 + +0.3 21,128 + MMP_RS00085 0.14 -0.4 21,209 - MMP_RS00085 0.22 -0.3 21,271 + MMP_RS00085 0.28 -0.2 21,518 - MMP_RS00085 0.51 -0.8 21,523 - MMP_RS00085 0.51 -0.1 21,567 - MMP_RS00085 0.56 +0.1 21,588 + MMP_RS00085 0.57 -0.9 21,692 + MMP_RS00085 0.67 -1.1 21,713 - MMP_RS00085 0.69 +0.4 21,721 + MMP_RS00085 0.70 -0.1 21,743 - MMP_RS00085 0.72 -0.1 21,763 - MMP_RS00085 0.74 -0.6 21,779 + MMP_RS00085 0.75 -0.2 21,826 - MMP_RS00085 0.80 +0.2 21,826 - MMP_RS00085 0.80 -0.1 21,827 + MMP_RS00085 0.80 +0.2 21,827 + MMP_RS00085 0.80 -0.7 22,073 - +0.0 22,073 - +0.3 22,074 + -0.7 22,075 - +0.1 22,075 - +0.2 22,075 - -0.1 22,076 + -0.1 22,076 + +1.5 22,076 + +0.0 22,076 + +0.3 22,076 + -0.7 22,089 - +0.1 22,109 + -0.9 22,109 + -0.2 22,128 - +1.9 22,128 - +0.3 22,128 - +0.4 22,158 + MMP_RS00090 0.10 -0.1 22,259 + MMP_RS00090 0.33 +0.0 22,279 + MMP_RS00090 0.37 -0.1 22,279 + MMP_RS00090 0.37 -0.4 22,334 - MMP_RS00090 0.50 +0.4 22,335 + MMP_RS00090 0.50 -0.8 22,335 + MMP_RS00090 0.50 +0.5 22,337 + MMP_RS00090 0.50 -0.6 22,540 + -0.3 22,576 + +0.1
Or see this region's nucleotide sequence