Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2128

Experiment: A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2125 and Ga0059261_2126 are separated by 11 nucleotidesGa0059261_2126 and Ga0059261_2127 are separated by 6 nucleotidesGa0059261_2127 and Ga0059261_2128 overlap by 4 nucleotidesGa0059261_2128 and Ga0059261_2129 overlap by 1 nucleotidesGa0059261_2129 and Ga0059261_2130 are separated by 23 nucleotides Ga0059261_2125: Ga0059261_2125 - ATP-dependent helicase HrpB, at 2,238,830 to 2,241,286 _2125 Ga0059261_2126: Ga0059261_2126 - ETC complex I subunit conserved region, at 2,241,298 to 2,241,579 _2126 Ga0059261_2127: Ga0059261_2127 - NUDIX domain, at 2,241,586 to 2,242,122 _2127 Ga0059261_2128: Ga0059261_2128 - Predicted membrane protein, at 2,242,119 to 2,242,796 _2128 Ga0059261_2129: Ga0059261_2129 - Beta-propeller domains of methanol dehydrogenase type, at 2,242,796 to 2,243,647 _2129 Ga0059261_2130: Ga0059261_2130 - Uncharacterized conserved protein, at 2,243,671 to 2,244,255 _2130 Position (kb) 2242 2243Strain fitness (log2 ratio) -2 -1 0 1 2at 2241.194 kb on + strandat 2241.284 kb on + strandat 2241.316 kb on + strandat 2241.316 kb on + strandat 2241.316 kb on + strandat 2241.316 kb on + strandat 2241.316 kb on + strandat 2241.316 kb on + strandat 2241.317 kb on - strandat 2241.317 kb on - strandat 2241.317 kb on - strandat 2241.317 kb on - strandat 2241.379 kb on + strand, within Ga0059261_2126at 2241.379 kb on + strand, within Ga0059261_2126at 2241.379 kb on + strand, within Ga0059261_2126at 2241.379 kb on + strand, within Ga0059261_2126at 2241.379 kb on + strand, within Ga0059261_2126at 2241.380 kb on - strand, within Ga0059261_2126at 2241.380 kb on - strand, within Ga0059261_2126at 2241.380 kb on - strand, within Ga0059261_2126at 2241.380 kb on - strand, within Ga0059261_2126at 2241.490 kb on + strand, within Ga0059261_2126at 2241.490 kb on + strand, within Ga0059261_2126at 2241.490 kb on + strand, within Ga0059261_2126at 2241.490 kb on + strand, within Ga0059261_2126at 2241.490 kb on + strand, within Ga0059261_2126at 2241.491 kb on - strand, within Ga0059261_2126at 2241.491 kb on - strand, within Ga0059261_2126at 2241.559 kb on + strandat 2241.560 kb on - strandat 2241.560 kb on - strandat 2241.578 kb on - strandat 2241.806 kb on + strand, within Ga0059261_2127at 2241.806 kb on + strand, within Ga0059261_2127at 2241.806 kb on + strand, within Ga0059261_2127at 2241.806 kb on + strand, within Ga0059261_2127at 2241.807 kb on - strand, within Ga0059261_2127at 2241.807 kb on - strand, within Ga0059261_2127at 2241.807 kb on - strand, within Ga0059261_2127at 2241.807 kb on - strand, within Ga0059261_2127at 2241.839 kb on + strand, within Ga0059261_2127at 2241.956 kb on + strand, within Ga0059261_2127at 2241.956 kb on + strand, within Ga0059261_2127at 2241.956 kb on + strand, within Ga0059261_2127at 2241.957 kb on - strand, within Ga0059261_2127at 2242.037 kb on + strand, within Ga0059261_2127at 2242.037 kb on + strand, within Ga0059261_2127at 2242.037 kb on + strand, within Ga0059261_2127at 2242.037 kb on + strand, within Ga0059261_2127at 2242.038 kb on - strand, within Ga0059261_2127at 2242.038 kb on - strand, within Ga0059261_2127at 2242.038 kb on - strand, within Ga0059261_2127at 2242.038 kb on - strand, within Ga0059261_2127at 2242.038 kb on - strand, within Ga0059261_2127at 2242.038 kb on - strand, within Ga0059261_2127at 2242.038 kb on - strandat 2242.281 kb on + strand, within Ga0059261_2128at 2242.354 kb on + strand, within Ga0059261_2128at 2242.354 kb on + strand, within Ga0059261_2128at 2242.355 kb on - strand, within Ga0059261_2128at 2242.681 kb on + strand, within Ga0059261_2128at 2242.681 kb on + strand, within Ga0059261_2128at 2242.682 kb on - strand, within Ga0059261_2128at 2242.682 kb on - strand, within Ga0059261_2128at 2242.931 kb on - strand, within Ga0059261_2129at 2243.060 kb on + strand, within Ga0059261_2129at 2243.060 kb on + strand, within Ga0059261_2129at 2243.060 kb on + strand, within Ga0059261_2129at 2243.060 kb on + strand, within Ga0059261_2129at 2243.060 kb on + strand, within Ga0059261_2129at 2243.061 kb on - strand, within Ga0059261_2129at 2243.061 kb on - strand, within Ga0059261_2129at 2243.061 kb on - strand, within Ga0059261_2129at 2243.061 kb on - strand, within Ga0059261_2129at 2243.061 kb on - strand, within Ga0059261_2129at 2243.061 kb on - strand, within Ga0059261_2129at 2243.202 kb on - strand, within Ga0059261_2129at 2243.415 kb on + strand, within Ga0059261_2129at 2243.415 kb on + strand, within Ga0059261_2129at 2243.415 kb on + strand, within Ga0059261_2129at 2243.421 kb on + strand, within Ga0059261_2129at 2243.421 kb on + strand, within Ga0059261_2129at 2243.421 kb on + strand, within Ga0059261_2129at 2243.421 kb on + strand, within Ga0059261_2129at 2243.422 kb on - strand, within Ga0059261_2129at 2243.422 kb on - strand, within Ga0059261_2129at 2243.422 kb on - strand, within Ga0059261_2129at 2243.422 kb on - strand, within Ga0059261_2129at 2243.422 kb on - strand, within Ga0059261_2129at 2243.756 kb on + strand, within Ga0059261_2130at 2243.756 kb on + strandat 2243.756 kb on + strand, within Ga0059261_2130at 2243.757 kb on - strand, within Ga0059261_2130at 2243.757 kb on - strand, within Ga0059261_2130

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.01 mg/ml
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2,241,194 + +0.7
2,241,284 + +2.3
2,241,316 + -1.8
2,241,316 + -1.3
2,241,316 + +0.7
2,241,316 + -0.6
2,241,316 + -1.0
2,241,316 + +0.8
2,241,317 - +0.2
2,241,317 - +0.8
2,241,317 - -0.3
2,241,317 - +0.6
2,241,379 + Ga0059261_2126 0.29 +0.1
2,241,379 + Ga0059261_2126 0.29 -0.3
2,241,379 + Ga0059261_2126 0.29 +0.1
2,241,379 + Ga0059261_2126 0.29 +0.6
2,241,379 + Ga0059261_2126 0.29 +0.5
2,241,380 - Ga0059261_2126 0.29 +1.0
2,241,380 - Ga0059261_2126 0.29 +1.3
2,241,380 - Ga0059261_2126 0.29 +0.1
2,241,380 - Ga0059261_2126 0.29 -0.3
2,241,490 + Ga0059261_2126 0.68 +1.0
2,241,490 + Ga0059261_2126 0.68 +0.7
2,241,490 + Ga0059261_2126 0.68 -2.0
2,241,490 + Ga0059261_2126 0.68 +0.0
2,241,490 + Ga0059261_2126 0.68 +0.7
2,241,491 - Ga0059261_2126 0.68 +0.1
2,241,491 - Ga0059261_2126 0.68 +1.3
2,241,559 + -0.8
2,241,560 - +1.0
2,241,560 - -0.2
2,241,578 - +1.0
2,241,806 + Ga0059261_2127 0.41 +0.6
2,241,806 + Ga0059261_2127 0.41 -0.9
2,241,806 + Ga0059261_2127 0.41 +0.7
2,241,806 + Ga0059261_2127 0.41 -0.2
2,241,807 - Ga0059261_2127 0.41 +0.5
2,241,807 - Ga0059261_2127 0.41 +1.3
2,241,807 - Ga0059261_2127 0.41 +0.6
2,241,807 - Ga0059261_2127 0.41 -0.8
2,241,839 + Ga0059261_2127 0.47 +2.7
2,241,956 + Ga0059261_2127 0.69 +1.3
2,241,956 + Ga0059261_2127 0.69 -0.3
2,241,956 + Ga0059261_2127 0.69 +0.2
2,241,957 - Ga0059261_2127 0.69 -0.3
2,242,037 + Ga0059261_2127 0.84 +0.8
2,242,037 + Ga0059261_2127 0.84 -0.2
2,242,037 + Ga0059261_2127 0.84 -0.3
2,242,037 + Ga0059261_2127 0.84 +0.7
2,242,038 - Ga0059261_2127 0.84 +1.6
2,242,038 - Ga0059261_2127 0.84 -0.4
2,242,038 - Ga0059261_2127 0.84 +0.5
2,242,038 - Ga0059261_2127 0.84 -0.5
2,242,038 - Ga0059261_2127 0.84 -0.1
2,242,038 - Ga0059261_2127 0.84 -0.3
2,242,038 - +1.3
2,242,281 + Ga0059261_2128 0.24 +1.6
2,242,354 + Ga0059261_2128 0.35 +0.4
2,242,354 + Ga0059261_2128 0.35 +0.4
2,242,355 - Ga0059261_2128 0.35 +0.9
2,242,681 + Ga0059261_2128 0.83 +0.2
2,242,681 + Ga0059261_2128 0.83 +1.2
2,242,682 - Ga0059261_2128 0.83 +1.7
2,242,682 - Ga0059261_2128 0.83 +0.9
2,242,931 - Ga0059261_2129 0.16 +0.3
2,243,060 + Ga0059261_2129 0.31 +0.4
2,243,060 + Ga0059261_2129 0.31 +0.7
2,243,060 + Ga0059261_2129 0.31 +0.7
2,243,060 + Ga0059261_2129 0.31 +0.5
2,243,060 + Ga0059261_2129 0.31 +1.5
2,243,061 - Ga0059261_2129 0.31 +0.5
2,243,061 - Ga0059261_2129 0.31 +1.8
2,243,061 - Ga0059261_2129 0.31 -0.8
2,243,061 - Ga0059261_2129 0.31 +0.8
2,243,061 - Ga0059261_2129 0.31 +0.2
2,243,061 - Ga0059261_2129 0.31 +0.3
2,243,202 - Ga0059261_2129 0.48 +0.8
2,243,415 + Ga0059261_2129 0.73 +0.1
2,243,415 + Ga0059261_2129 0.73 +0.5
2,243,415 + Ga0059261_2129 0.73 +0.2
2,243,421 + Ga0059261_2129 0.73 -0.0
2,243,421 + Ga0059261_2129 0.73 +0.5
2,243,421 + Ga0059261_2129 0.73 +1.7
2,243,421 + Ga0059261_2129 0.73 +1.0
2,243,422 - Ga0059261_2129 0.73 +0.6
2,243,422 - Ga0059261_2129 0.73 -0.1
2,243,422 - Ga0059261_2129 0.73 +0.7
2,243,422 - Ga0059261_2129 0.73 +1.1
2,243,422 - Ga0059261_2129 0.73 -2.2
2,243,756 + Ga0059261_2130 0.15 -0.8
2,243,756 + +1.3
2,243,756 + Ga0059261_2130 0.15 +1.3
2,243,757 - Ga0059261_2130 0.15 +0.2
2,243,757 - Ga0059261_2130 0.15 +0.1

Or see this region's nucleotide sequence