Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1877

Experiment: A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1876 and Ga0059261_1877 are separated by 31 nucleotidesGa0059261_1877 and Ga0059261_1878 are separated by 21 nucleotides Ga0059261_1876: Ga0059261_1876 - Predicted membrane protein, at 1,985,328 to 1,986,632 _1876 Ga0059261_1877: Ga0059261_1877 - Cation/multidrug efflux pump, at 1,986,664 to 1,989,798 _1877 Ga0059261_1878: Ga0059261_1878 - RND family efflux transporter, MFP subunit, at 1,989,820 to 1,991,028 _1878 Position (kb) 1986 1987 1988 1989 1990Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1985.744 kb on - strand, within Ga0059261_1876at 1985.857 kb on + strand, within Ga0059261_1876at 1985.857 kb on + strand, within Ga0059261_1876at 1985.857 kb on + strand, within Ga0059261_1876at 1985.857 kb on + strand, within Ga0059261_1876at 1985.857 kb on + strand, within Ga0059261_1876at 1985.857 kb on + strand, within Ga0059261_1876at 1985.858 kb on - strand, within Ga0059261_1876at 1985.858 kb on - strand, within Ga0059261_1876at 1985.858 kb on - strand, within Ga0059261_1876at 1985.858 kb on - strand, within Ga0059261_1876at 1985.858 kb on - strand, within Ga0059261_1876at 1985.895 kb on + strand, within Ga0059261_1876at 1985.895 kb on + strand, within Ga0059261_1876at 1985.896 kb on - strand, within Ga0059261_1876at 1986.469 kb on + strand, within Ga0059261_1876at 1986.470 kb on - strand, within Ga0059261_1876at 1986.470 kb on - strand, within Ga0059261_1876at 1986.487 kb on + strand, within Ga0059261_1876at 1986.488 kb on - strand, within Ga0059261_1876at 1986.488 kb on - strand, within Ga0059261_1876at 1986.488 kb on - strand, within Ga0059261_1876at 1986.488 kb on - strand, within Ga0059261_1876at 1986.764 kb on + strandat 1986.764 kb on + strandat 1986.764 kb on + strandat 1986.764 kb on + strandat 1986.764 kb on + strandat 1986.764 kb on + strandat 1986.764 kb on + strandat 1986.764 kb on + strandat 1986.764 kb on + strandat 1986.765 kb on - strandat 1986.765 kb on - strandat 1986.765 kb on - strandat 1986.765 kb on - strandat 1986.765 kb on - strandat 1986.765 kb on - strandat 1986.765 kb on - strandat 1986.765 kb on - strandat 1986.765 kb on - strandat 1986.996 kb on + strand, within Ga0059261_1877at 1986.996 kb on + strand, within Ga0059261_1877at 1986.997 kb on - strand, within Ga0059261_1877at 1986.997 kb on - strand, within Ga0059261_1877at 1986.997 kb on - strand, within Ga0059261_1877at 1987.116 kb on + strand, within Ga0059261_1877at 1987.118 kb on + strand, within Ga0059261_1877at 1987.118 kb on + strand, within Ga0059261_1877at 1987.118 kb on + strandat 1987.118 kb on + strand, within Ga0059261_1877at 1987.118 kb on + strand, within Ga0059261_1877at 1987.118 kb on + strand, within Ga0059261_1877at 1987.119 kb on - strand, within Ga0059261_1877at 1987.119 kb on - strand, within Ga0059261_1877at 1987.119 kb on - strand, within Ga0059261_1877at 1987.119 kb on - strand, within Ga0059261_1877at 1987.226 kb on + strand, within Ga0059261_1877at 1987.227 kb on - strand, within Ga0059261_1877at 1987.227 kb on - strand, within Ga0059261_1877at 1987.260 kb on + strand, within Ga0059261_1877at 1988.033 kb on + strand, within Ga0059261_1877at 1988.033 kb on + strand, within Ga0059261_1877at 1988.033 kb on + strand, within Ga0059261_1877at 1988.033 kb on + strand, within Ga0059261_1877at 1988.033 kb on + strand, within Ga0059261_1877at 1988.033 kb on + strand, within Ga0059261_1877at 1988.033 kb on + strand, within Ga0059261_1877at 1988.033 kb on + strand, within Ga0059261_1877at 1988.033 kb on + strand, within Ga0059261_1877at 1988.033 kb on + strand, within Ga0059261_1877at 1988.033 kb on + strand, within Ga0059261_1877at 1988.033 kb on + strand, within Ga0059261_1877at 1988.034 kb on - strand, within Ga0059261_1877at 1988.034 kb on - strand, within Ga0059261_1877at 1988.273 kb on + strand, within Ga0059261_1877at 1988.274 kb on + strand, within Ga0059261_1877at 1988.274 kb on + strand, within Ga0059261_1877at 1988.274 kb on + strand, within Ga0059261_1877at 1988.274 kb on + strand, within Ga0059261_1877at 1988.274 kb on + strandat 1988.274 kb on + strand, within Ga0059261_1877at 1988.274 kb on + strand, within Ga0059261_1877at 1988.274 kb on + strand, within Ga0059261_1877at 1988.275 kb on - strand, within Ga0059261_1877at 1988.275 kb on - strand, within Ga0059261_1877at 1988.275 kb on - strand, within Ga0059261_1877at 1988.275 kb on - strand, within Ga0059261_1877at 1988.275 kb on - strand, within Ga0059261_1877at 1988.275 kb on - strand, within Ga0059261_1877at 1988.275 kb on - strand, within Ga0059261_1877at 1988.275 kb on - strand, within Ga0059261_1877at 1988.275 kb on - strandat 1988.275 kb on - strand, within Ga0059261_1877at 1988.275 kb on - strand, within Ga0059261_1877at 1988.275 kb on - strand, within Ga0059261_1877at 1988.275 kb on - strand, within Ga0059261_1877at 1988.276 kb on + strand, within Ga0059261_1877at 1988.276 kb on + strand, within Ga0059261_1877at 1988.276 kb on + strand, within Ga0059261_1877at 1988.276 kb on + strand, within Ga0059261_1877at 1988.276 kb on + strand, within Ga0059261_1877at 1988.276 kb on + strand, within Ga0059261_1877at 1988.276 kb on + strand, within Ga0059261_1877at 1988.276 kb on + strand, within Ga0059261_1877at 1988.276 kb on + strand, within Ga0059261_1877at 1988.276 kb on + strand, within Ga0059261_1877at 1988.276 kb on + strand, within Ga0059261_1877at 1988.276 kb on + strand, within Ga0059261_1877at 1988.276 kb on + strand, within Ga0059261_1877at 1988.277 kb on - strand, within Ga0059261_1877at 1988.277 kb on - strand, within Ga0059261_1877at 1988.277 kb on - strand, within Ga0059261_1877at 1988.277 kb on - strand, within Ga0059261_1877at 1988.277 kb on - strand, within Ga0059261_1877at 1988.277 kb on - strand, within Ga0059261_1877at 1988.277 kb on - strandat 1988.277 kb on - strand, within Ga0059261_1877at 1988.277 kb on - strand, within Ga0059261_1877at 1988.277 kb on - strand, within Ga0059261_1877at 1988.277 kb on - strand, within Ga0059261_1877at 1988.277 kb on - strand, within Ga0059261_1877at 1988.277 kb on - strand, within Ga0059261_1877at 1988.277 kb on - strand, within Ga0059261_1877at 1988.277 kb on - strand, within Ga0059261_1877at 1988.277 kb on - strand, within Ga0059261_1877at 1988.277 kb on - strand, within Ga0059261_1877at 1988.277 kb on - strand, within Ga0059261_1877at 1988.279 kb on - strand, within Ga0059261_1877at 1988.333 kb on + strand, within Ga0059261_1877at 1988.333 kb on + strand, within Ga0059261_1877at 1988.333 kb on + strand, within Ga0059261_1877at 1988.334 kb on - strand, within Ga0059261_1877at 1988.355 kb on + strand, within Ga0059261_1877at 1988.355 kb on + strand, within Ga0059261_1877at 1988.356 kb on - strand, within Ga0059261_1877at 1988.356 kb on - strand, within Ga0059261_1877at 1988.356 kb on - strand, within Ga0059261_1877at 1988.356 kb on - strand, within Ga0059261_1877at 1988.356 kb on - strand, within Ga0059261_1877at 1988.534 kb on + strand, within Ga0059261_1877at 1988.534 kb on + strand, within Ga0059261_1877at 1988.645 kb on - strand, within Ga0059261_1877at 1988.672 kb on + strand, within Ga0059261_1877at 1988.805 kb on - strand, within Ga0059261_1877at 1988.820 kb on - strand, within Ga0059261_1877at 1988.820 kb on - strand, within Ga0059261_1877at 1988.996 kb on + strand, within Ga0059261_1877at 1988.996 kb on + strand, within Ga0059261_1877at 1988.996 kb on + strand, within Ga0059261_1877at 1988.996 kb on + strand, within Ga0059261_1877at 1988.996 kb on + strand, within Ga0059261_1877at 1988.996 kb on + strand, within Ga0059261_1877at 1988.997 kb on - strand, within Ga0059261_1877at 1988.997 kb on - strand, within Ga0059261_1877at 1988.997 kb on - strand, within Ga0059261_1877at 1989.203 kb on + strand, within Ga0059261_1877at 1989.203 kb on + strand, within Ga0059261_1877at 1989.203 kb on + strand, within Ga0059261_1877at 1989.204 kb on - strand, within Ga0059261_1877at 1989.312 kb on + strand, within Ga0059261_1877at 1989.312 kb on + strand, within Ga0059261_1877at 1989.312 kb on + strand, within Ga0059261_1877at 1989.313 kb on - strand, within Ga0059261_1877at 1989.313 kb on - strand, within Ga0059261_1877at 1989.313 kb on - strand, within Ga0059261_1877at 1989.313 kb on - strand, within Ga0059261_1877at 1989.323 kb on + strand, within Ga0059261_1877at 1989.323 kb on + strand, within Ga0059261_1877at 1989.323 kb on + strand, within Ga0059261_1877at 1989.323 kb on + strandat 1989.324 kb on - strand, within Ga0059261_1877at 1989.324 kb on - strand, within Ga0059261_1877at 1989.324 kb on - strand, within Ga0059261_1877at 1989.324 kb on - strand, within Ga0059261_1877at 1989.803 kb on + strandat 1989.803 kb on + strandat 1989.803 kb on + strandat 1989.803 kb on + strandat 1989.803 kb on + strandat 1989.803 kb on + strandat 1989.803 kb on + strandat 1989.803 kb on + strandat 1989.804 kb on - strandat 1989.804 kb on - strandat 1989.804 kb on - strandat 1989.804 kb on - strandat 1989.810 kb on + strandat 1989.810 kb on + strandat 1989.810 kb on + strandat 1989.810 kb on + strandat 1989.811 kb on - strandat 1989.811 kb on - strandat 1989.811 kb on - strandat 1989.811 kb on - strandat 1989.811 kb on - strandat 1989.811 kb on - strandat 1989.921 kb on + strandat 1989.921 kb on + strandat 1989.922 kb on - strandat 1989.998 kb on + strand, within Ga0059261_1878at 1989.998 kb on + strand, within Ga0059261_1878at 1989.998 kb on + strand, within Ga0059261_1878at 1989.998 kb on + strand, within Ga0059261_1878at 1989.998 kb on + strand, within Ga0059261_1878at 1989.999 kb on - strand, within Ga0059261_1878at 1989.999 kb on - strand, within Ga0059261_1878at 1989.999 kb on - strand, within Ga0059261_1878at 1989.999 kb on - strand, within Ga0059261_1878at 1990.115 kb on + strand, within Ga0059261_1878at 1990.115 kb on + strand, within Ga0059261_1878at 1990.116 kb on - strand, within Ga0059261_1878at 1990.116 kb on - strand, within Ga0059261_1878at 1990.391 kb on - strand, within Ga0059261_1878at 1990.690 kb on + strand, within Ga0059261_1878at 1990.690 kb on + strand, within Ga0059261_1878

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.01 mg/ml
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1,985,744 - Ga0059261_1876 0.32 +0.0
1,985,857 + Ga0059261_1876 0.41 -0.4
1,985,857 + Ga0059261_1876 0.41 +0.0
1,985,857 + Ga0059261_1876 0.41 -2.0
1,985,857 + Ga0059261_1876 0.41 -0.3
1,985,857 + Ga0059261_1876 0.41 +0.1
1,985,857 + Ga0059261_1876 0.41 +1.0
1,985,858 - Ga0059261_1876 0.41 -1.5
1,985,858 - Ga0059261_1876 0.41 -0.9
1,985,858 - Ga0059261_1876 0.41 +0.2
1,985,858 - Ga0059261_1876 0.41 +0.4
1,985,858 - Ga0059261_1876 0.41 +0.1
1,985,895 + Ga0059261_1876 0.43 -0.6
1,985,895 + Ga0059261_1876 0.43 -1.0
1,985,896 - Ga0059261_1876 0.44 -0.3
1,986,469 + Ga0059261_1876 0.87 -0.5
1,986,470 - Ga0059261_1876 0.88 -0.2
1,986,470 - Ga0059261_1876 0.88 -0.2
1,986,487 + Ga0059261_1876 0.89 +0.4
1,986,488 - Ga0059261_1876 0.89 -0.6
1,986,488 - Ga0059261_1876 0.89 +0.6
1,986,488 - Ga0059261_1876 0.89 +0.1
1,986,488 - Ga0059261_1876 0.89 -0.2
1,986,764 + -1.1
1,986,764 + -0.3
1,986,764 + +0.3
1,986,764 + -0.2
1,986,764 + -1.3
1,986,764 + -0.2
1,986,764 + -0.5
1,986,764 + -0.8
1,986,764 + -1.7
1,986,765 - -1.1
1,986,765 - -0.5
1,986,765 - -0.4
1,986,765 - -0.3
1,986,765 - -0.3
1,986,765 - -1.2
1,986,765 - -0.4
1,986,765 - -0.5
1,986,765 - +0.0
1,986,996 + Ga0059261_1877 0.11 +0.0
1,986,996 + Ga0059261_1877 0.11 +0.5
1,986,997 - Ga0059261_1877 0.11 -2.0
1,986,997 - Ga0059261_1877 0.11 -0.4
1,986,997 - Ga0059261_1877 0.11 -0.1
1,987,116 + Ga0059261_1877 0.14 -0.4
1,987,118 + Ga0059261_1877 0.14 -0.5
1,987,118 + Ga0059261_1877 0.14 -0.3
1,987,118 + -0.2
1,987,118 + Ga0059261_1877 0.14 -0.5
1,987,118 + Ga0059261_1877 0.14 -0.4
1,987,118 + Ga0059261_1877 0.14 -1.0
1,987,119 - Ga0059261_1877 0.15 +0.3
1,987,119 - Ga0059261_1877 0.15 +0.4
1,987,119 - Ga0059261_1877 0.15 -0.7
1,987,119 - Ga0059261_1877 0.15 -0.8
1,987,226 + Ga0059261_1877 0.18 -0.1
1,987,227 - Ga0059261_1877 0.18 -0.5
1,987,227 - Ga0059261_1877 0.18 +0.6
1,987,260 + Ga0059261_1877 0.19 +0.1
1,988,033 + Ga0059261_1877 0.44 -0.7
1,988,033 + Ga0059261_1877 0.44 -0.1
1,988,033 + Ga0059261_1877 0.44 +0.0
1,988,033 + Ga0059261_1877 0.44 +2.4
1,988,033 + Ga0059261_1877 0.44 -1.4
1,988,033 + Ga0059261_1877 0.44 -1.0
1,988,033 + Ga0059261_1877 0.44 -0.4
1,988,033 + Ga0059261_1877 0.44 -0.4
1,988,033 + Ga0059261_1877 0.44 -0.6
1,988,033 + Ga0059261_1877 0.44 +0.1
1,988,033 + Ga0059261_1877 0.44 -1.3
1,988,033 + Ga0059261_1877 0.44 +0.6
1,988,034 - Ga0059261_1877 0.44 -0.2
1,988,034 - Ga0059261_1877 0.44 +0.4
1,988,273 + Ga0059261_1877 0.51 -0.2
1,988,274 + Ga0059261_1877 0.51 -0.2
1,988,274 + Ga0059261_1877 0.51 -0.2
1,988,274 + Ga0059261_1877 0.51 +0.4
1,988,274 + Ga0059261_1877 0.51 -0.1
1,988,274 + +2.9
1,988,274 + Ga0059261_1877 0.51 -1.1
1,988,274 + Ga0059261_1877 0.51 -0.9
1,988,274 + Ga0059261_1877 0.51 +0.2
1,988,275 - Ga0059261_1877 0.51 -0.2
1,988,275 - Ga0059261_1877 0.51 +0.4
1,988,275 - Ga0059261_1877 0.51 -0.4
1,988,275 - Ga0059261_1877 0.51 +0.1
1,988,275 - Ga0059261_1877 0.51 -1.7
1,988,275 - Ga0059261_1877 0.51 -0.6
1,988,275 - Ga0059261_1877 0.51 -0.1
1,988,275 - Ga0059261_1877 0.51 +0.9
1,988,275 - -0.2
1,988,275 - Ga0059261_1877 0.51 -1.0
1,988,275 - Ga0059261_1877 0.51 -1.0
1,988,275 - Ga0059261_1877 0.51 -0.4
1,988,275 - Ga0059261_1877 0.51 -0.3
1,988,276 + Ga0059261_1877 0.51 -0.5
1,988,276 + Ga0059261_1877 0.51 -0.1
1,988,276 + Ga0059261_1877 0.51 -0.6
1,988,276 + Ga0059261_1877 0.51 +0.0
1,988,276 + Ga0059261_1877 0.51 -0.6
1,988,276 + Ga0059261_1877 0.51 +1.4
1,988,276 + Ga0059261_1877 0.51 -2.0
1,988,276 + Ga0059261_1877 0.51 -0.1
1,988,276 + Ga0059261_1877 0.51 -0.1
1,988,276 + Ga0059261_1877 0.51 +0.3
1,988,276 + Ga0059261_1877 0.51 +0.8
1,988,276 + Ga0059261_1877 0.51 -0.2
1,988,276 + Ga0059261_1877 0.51 -0.0
1,988,277 - Ga0059261_1877 0.51 +0.1
1,988,277 - Ga0059261_1877 0.51 +0.3
1,988,277 - Ga0059261_1877 0.51 -0.0
1,988,277 - Ga0059261_1877 0.51 +0.6
1,988,277 - Ga0059261_1877 0.51 +0.4
1,988,277 - Ga0059261_1877 0.51 +0.1
1,988,277 - -0.6
1,988,277 - Ga0059261_1877 0.51 -0.1
1,988,277 - Ga0059261_1877 0.51 +0.2
1,988,277 - Ga0059261_1877 0.51 -1.1
1,988,277 - Ga0059261_1877 0.51 -1.0
1,988,277 - Ga0059261_1877 0.51 -0.2
1,988,277 - Ga0059261_1877 0.51 -0.2
1,988,277 - Ga0059261_1877 0.51 +0.1
1,988,277 - Ga0059261_1877 0.51 -1.0
1,988,277 - Ga0059261_1877 0.51 -0.5
1,988,277 - Ga0059261_1877 0.51 -0.6
1,988,277 - Ga0059261_1877 0.51 +0.7
1,988,279 - Ga0059261_1877 0.52 -0.2
1,988,333 + Ga0059261_1877 0.53 -0.1
1,988,333 + Ga0059261_1877 0.53 -0.8
1,988,333 + Ga0059261_1877 0.53 +0.4
1,988,334 - Ga0059261_1877 0.53 -1.0
1,988,355 + Ga0059261_1877 0.54 -0.3
1,988,355 + Ga0059261_1877 0.54 -0.3
1,988,356 - Ga0059261_1877 0.54 -0.4
1,988,356 - Ga0059261_1877 0.54 -0.4
1,988,356 - Ga0059261_1877 0.54 -1.1
1,988,356 - Ga0059261_1877 0.54 -0.8
1,988,356 - Ga0059261_1877 0.54 -0.5
1,988,534 + Ga0059261_1877 0.60 +0.0
1,988,534 + Ga0059261_1877 0.60 -0.0
1,988,645 - Ga0059261_1877 0.63 -0.3
1,988,672 + Ga0059261_1877 0.64 -0.9
1,988,805 - Ga0059261_1877 0.68 -0.7
1,988,820 - Ga0059261_1877 0.69 -0.1
1,988,820 - Ga0059261_1877 0.69 +0.2
1,988,996 + Ga0059261_1877 0.74 +0.1
1,988,996 + Ga0059261_1877 0.74 +0.1
1,988,996 + Ga0059261_1877 0.74 -1.0
1,988,996 + Ga0059261_1877 0.74 +0.3
1,988,996 + Ga0059261_1877 0.74 -0.7
1,988,996 + Ga0059261_1877 0.74 -0.1
1,988,997 - Ga0059261_1877 0.74 +1.4
1,988,997 - Ga0059261_1877 0.74 -0.1
1,988,997 - Ga0059261_1877 0.74 -0.4
1,989,203 + Ga0059261_1877 0.81 -0.2
1,989,203 + Ga0059261_1877 0.81 -0.6
1,989,203 + Ga0059261_1877 0.81 +0.2
1,989,204 - Ga0059261_1877 0.81 -1.4
1,989,312 + Ga0059261_1877 0.84 -0.5
1,989,312 + Ga0059261_1877 0.84 -0.2
1,989,312 + Ga0059261_1877 0.84 +0.1
1,989,313 - Ga0059261_1877 0.84 -0.8
1,989,313 - Ga0059261_1877 0.84 +1.4
1,989,313 - Ga0059261_1877 0.84 -0.6
1,989,313 - Ga0059261_1877 0.84 -0.8
1,989,323 + Ga0059261_1877 0.85 -0.1
1,989,323 + Ga0059261_1877 0.85 -0.8
1,989,323 + Ga0059261_1877 0.85 +0.2
1,989,323 + +0.4
1,989,324 - Ga0059261_1877 0.85 +0.4
1,989,324 - Ga0059261_1877 0.85 -0.6
1,989,324 - Ga0059261_1877 0.85 +0.3
1,989,324 - Ga0059261_1877 0.85 -0.3
1,989,803 + +0.8
1,989,803 + +0.6
1,989,803 + +0.1
1,989,803 + +0.1
1,989,803 + -0.2
1,989,803 + +0.3
1,989,803 + -0.6
1,989,803 + -1.0
1,989,804 - -0.6
1,989,804 - -0.5
1,989,804 - -0.1
1,989,804 - +0.6
1,989,810 + -0.7
1,989,810 + +0.4
1,989,810 + -1.0
1,989,810 + -0.1
1,989,811 - -0.4
1,989,811 - -1.1
1,989,811 - +0.1
1,989,811 - -0.2
1,989,811 - -0.8
1,989,811 - -0.1
1,989,921 + -0.2
1,989,921 + -0.4
1,989,922 - +0.2
1,989,998 + Ga0059261_1878 0.15 -0.1
1,989,998 + Ga0059261_1878 0.15 +0.0
1,989,998 + Ga0059261_1878 0.15 +0.6
1,989,998 + Ga0059261_1878 0.15 +0.1
1,989,998 + Ga0059261_1878 0.15 +0.4
1,989,999 - Ga0059261_1878 0.15 -0.8
1,989,999 - Ga0059261_1878 0.15 -0.5
1,989,999 - Ga0059261_1878 0.15 +0.1
1,989,999 - Ga0059261_1878 0.15 -0.1
1,990,115 + Ga0059261_1878 0.24 -0.6
1,990,115 + Ga0059261_1878 0.24 -0.5
1,990,116 - Ga0059261_1878 0.24 +2.9
1,990,116 - Ga0059261_1878 0.24 +0.4
1,990,391 - Ga0059261_1878 0.47 -0.4
1,990,690 + Ga0059261_1878 0.72 +0.1
1,990,690 + Ga0059261_1878 0.72 +1.0

Or see this region's nucleotide sequence