Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0670 and Ga0059261_0671 are separated by 356 nucleotides Ga0059261_0671 and Ga0059261_0672 are separated by 48 nucleotides Ga0059261_0672 and Ga0059261_0673 overlap by 8 nucleotides
Ga0059261_0670: Ga0059261_0670 - hypothetical protein, at 707,332 to 708,441
_0670
Ga0059261_0671: Ga0059261_0671 - Uncharacterized conserved protein, at 708,798 to 709,031
_0671
Ga0059261_0672: Ga0059261_0672 - Domain of unknown function (DUF955), at 709,080 to 709,670
_0672
Ga0059261_0673: Ga0059261_0673 - hypothetical protein, at 709,663 to 710,769
_0673
Position (kb) 708
709
710 Strain fitness (log2 ratio) -2
-1
0
1 at 707.824 kb on - strand, within Ga0059261_0670 at 708.251 kb on + strand, within Ga0059261_0670 at 708.251 kb on + strand, within Ga0059261_0670 at 708.270 kb on + strand, within Ga0059261_0670 at 708.270 kb on + strand, within Ga0059261_0670 at 708.270 kb on + strand, within Ga0059261_0670 at 708.271 kb on - strand, within Ga0059261_0670 at 708.271 kb on - strand, within Ga0059261_0670 at 708.271 kb on - strand, within Ga0059261_0670 at 708.271 kb on - strand, within Ga0059261_0670 at 708.360 kb on - strand at 708.475 kb on + strand at 708.475 kb on + strand at 708.476 kb on - strand at 708.476 kb on - strand at 708.479 kb on + strand at 708.479 kb on + strand at 708.479 kb on + strand at 708.479 kb on + strand at 708.942 kb on + strand, within Ga0059261_0671 at 708.942 kb on + strand, within Ga0059261_0671 at 708.943 kb on - strand, within Ga0059261_0671 at 708.943 kb on - strand, within Ga0059261_0671 at 708.948 kb on + strand, within Ga0059261_0671 at 708.949 kb on - strand, within Ga0059261_0671 at 708.949 kb on - strand, within Ga0059261_0671 at 708.949 kb on - strand at 708.984 kb on + strand, within Ga0059261_0671 at 709.103 kb on - strand at 709.104 kb on + strand at 709.104 kb on + strand at 709.105 kb on - strand at 709.105 kb on - strand at 709.105 kb on - strand at 709.140 kb on + strand, within Ga0059261_0672 at 709.140 kb on + strand, within Ga0059261_0672 at 709.140 kb on + strand, within Ga0059261_0672 at 709.140 kb on + strand, within Ga0059261_0672 at 709.140 kb on + strand, within Ga0059261_0672 at 709.140 kb on + strand, within Ga0059261_0672 at 709.140 kb on + strand, within Ga0059261_0672 at 709.140 kb on + strand, within Ga0059261_0672 at 709.141 kb on - strand, within Ga0059261_0672 at 709.141 kb on - strand, within Ga0059261_0672 at 709.141 kb on - strand, within Ga0059261_0672 at 709.141 kb on - strand, within Ga0059261_0672 at 709.141 kb on - strand, within Ga0059261_0672 at 709.141 kb on - strand, within Ga0059261_0672 at 709.141 kb on - strand, within Ga0059261_0672 at 709.141 kb on - strand, within Ga0059261_0672 at 709.165 kb on + strand, within Ga0059261_0672 at 709.166 kb on - strand, within Ga0059261_0672 at 709.166 kb on - strand, within Ga0059261_0672 at 709.166 kb on - strand, within Ga0059261_0672 at 709.247 kb on - strand, within Ga0059261_0672 at 709.291 kb on + strand, within Ga0059261_0672 at 709.292 kb on - strand, within Ga0059261_0672 at 709.320 kb on + strand, within Ga0059261_0672 at 709.320 kb on + strand, within Ga0059261_0672 at 709.321 kb on - strand, within Ga0059261_0672 at 709.649 kb on - strand at 709.719 kb on + strand at 709.724 kb on + strand at 709.724 kb on + strand at 709.765 kb on - strand at 709.765 kb on - strand at 709.901 kb on - strand, within Ga0059261_0673 at 709.947 kb on - strand, within Ga0059261_0673
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 707,824 - Ga0059261_0670 0.44 +1.4 708,251 + Ga0059261_0670 0.83 -0.2 708,251 + Ga0059261_0670 0.83 +0.4 708,270 + Ga0059261_0670 0.85 -0.5 708,270 + Ga0059261_0670 0.85 +0.5 708,270 + Ga0059261_0670 0.85 +0.4 708,271 - Ga0059261_0670 0.85 +0.8 708,271 - Ga0059261_0670 0.85 +0.0 708,271 - Ga0059261_0670 0.85 -0.4 708,271 - Ga0059261_0670 0.85 -0.1 708,360 - +1.6 708,475 + -0.9 708,475 + +0.3 708,476 - -1.2 708,476 - -0.2 708,479 + -0.9 708,479 + +0.2 708,479 + -0.2 708,479 + +0.1 708,942 + Ga0059261_0671 0.62 +1.1 708,942 + Ga0059261_0671 0.62 -0.2 708,943 - Ga0059261_0671 0.62 +0.7 708,943 - Ga0059261_0671 0.62 -0.6 708,948 + Ga0059261_0671 0.64 -1.0 708,949 - Ga0059261_0671 0.65 +0.3 708,949 - Ga0059261_0671 0.65 +0.7 708,949 - +1.1 708,984 + Ga0059261_0671 0.79 +0.8 709,103 - -0.5 709,104 + -0.7 709,104 + +0.4 709,105 - -0.9 709,105 - -0.6 709,105 - +0.3 709,140 + Ga0059261_0672 0.10 +0.1 709,140 + Ga0059261_0672 0.10 -0.7 709,140 + Ga0059261_0672 0.10 +0.1 709,140 + Ga0059261_0672 0.10 +0.6 709,140 + Ga0059261_0672 0.10 +0.2 709,140 + Ga0059261_0672 0.10 -0.0 709,140 + Ga0059261_0672 0.10 +0.4 709,140 + Ga0059261_0672 0.10 +0.1 709,141 - Ga0059261_0672 0.10 +0.5 709,141 - Ga0059261_0672 0.10 -2.2 709,141 - Ga0059261_0672 0.10 -1.5 709,141 - Ga0059261_0672 0.10 -0.7 709,141 - Ga0059261_0672 0.10 +0.5 709,141 - Ga0059261_0672 0.10 -0.8 709,141 - Ga0059261_0672 0.10 +0.5 709,141 - Ga0059261_0672 0.10 -0.2 709,165 + Ga0059261_0672 0.14 -0.4 709,166 - Ga0059261_0672 0.15 -0.3 709,166 - Ga0059261_0672 0.15 -0.2 709,166 - Ga0059261_0672 0.15 -0.0 709,247 - Ga0059261_0672 0.28 -1.4 709,291 + Ga0059261_0672 0.36 +0.6 709,292 - Ga0059261_0672 0.36 -0.7 709,320 + Ga0059261_0672 0.41 +0.0 709,320 + Ga0059261_0672 0.41 -0.5 709,321 - Ga0059261_0672 0.41 -0.3 709,649 - -0.5 709,719 + -0.9 709,724 + +1.1 709,724 + +1.1 709,765 - -0.0 709,765 - +1.1 709,901 - Ga0059261_0673 0.21 -0.4 709,947 - Ga0059261_0673 0.26 +0.5
Or see this region's nucleotide sequence